Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.
Yueyu JiangDaniel McDonaldDaniela PerryRob KnightSiavash MirarabPublished in: Bioinform. (2024)
Keyphrases
- phylogenetic trees
- gene trees
- tree structure
- tree models
- rooted trees
- tree structures
- tree construction
- tree nodes
- labeled trees
- leaf nodes
- tree mining
- tree crown
- binary tree
- tree representation
- high speed
- tree automata
- tree like structures
- tree edit distance
- tree matching
- evolutionary history
- decision trees
- computational biology
- tree structured data
- classification trees
- regression trees
- prefix tree
- kd trees
- aerial images
- maximum parsimony
- unordered trees
- index structure
- maximum likelihood
- tree languages
- decision tree learning
- tree induction
- internal nodes
- hierarchical structure
- pattern matching
- data structure