Daniel-Adriano Silva

Publication Activity (10 Years)

Years Active: 2011-2019
Publications (10 Years): 3

Top Topics

Structural Models

Causal Relationships

Top Venues

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Daniel-Adriano Silva, Shawn Yu, Umut Y. Ulge, Jamie B. Spangler, Kevin M. Jude, Carlos Labão-Almeida, Lestat R. Ali, Alfredo Quijano-Rubio, Mikel Ruterbusch, Isabel Leung, Tamara Biary, Stephanie J. Crowley, Enrique Marcos, Carl D. Walkey, Brian D. Weitzner, Fátima Pardo Avila, Javier Castellanos, Lauren P. Carter, Lance J. Stewart, Stanley R. Riddell, Marion Pepper, Gonçalo J. L. Bernardes, Michael Dougan, K. Christopher Garcia, David Baker
De novo design of potent and selective mimics of IL-2 and IL-15. Nat. 565 (7738) (2019)
Brian Koepnick, Jeff Flatten, Tamir Husain, Alex Ford, Daniel-Adriano Silva, Matthew J. Bick, Aaron Bauer, Gaohua Liu, Yojiro Ishida, Alexander Boykov, Roger D. Estep, Susan Kleinfelter, Toke Nørgård-Solano, Linda Wei, Foldit players, Gaetano T. Montelione, Frank DiMaio, Zoran Popovic, Firas Khatib, Seth Cooper, David Baker
De novo protein design by citizen scientists. Nat. 570 (7761) (2019)
Aaron Chevalier, Daniel-Adriano Silva, Gabriel J. Rocklin, Derrick R. Hicks, Renan Vergara, Patience Murapa, Steffen M. Bernard, Lu Zhang, Kwok-Ho Lam, Guorui Yao, Christopher D. Bahl, Shin-Ichiro Miyashita, Inna Goreshnik, James T. Fuller, Merika T. Koday, Cody M. Jenkins, Tom Colvin, Lauren P. Carter, Alan Bohn, Cassie M. Bryan, D. Alejandro Fernández-Velasco, Lance J. Stewart, Min Dong, Xuhui Huang, Rongsheng Jin, Ian A. Wilson, Deborah H. Fuller, David Baker
protein design for targeted therapeutics. Nat. 550 (7674) (2017)
Lu Zhang, Daniel-Adriano Silva, Fátima Pardo Avila, Dong Wang, Xuhui Huang
Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes. PLoS Comput. Biol. 11 (7) (2015)
Shuo Gu, Daniel-Adriano Silva, Luming Meng, Alexander Yue, Xuhui Huang
Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis. PLoS Comput. Biol. 10 (8) (2014)
Lu Zhang, Daniel-Adriano Silva, YiJing Yan, Xuhui Huang
Force field development for cofactors in the photosystem II. J. Comput. Chem. 33 (25) (2012)
Daniel-Adriano Silva, Gregory R. Bowman, Alejandro Sosa-Peinado, Xuhui Huang
A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein. PLoS Comput. Biol. 7 (5) (2011)