Frank DiMaio

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 4

Top Topics

Tandem Mass Spectra

Highly Structured

Computational Methods

Protein Structure

Top Venues

PLoS Comput. Biol.

Publications

Ryan E. Pavlovicz, Hahnbeom Park, Frank DiMaio
Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination. PLoS Comput. Biol. 16 (9) (2020)
Zibo Chen, Scott E. Boyken, Mengxuan Jia, Florian Busch, David Flores-Solis, Matthew J. Bick, Peilong Lu, Zachary L. VanAernum, Aniruddha Sahasrabuddhe, Robert A. Langan, Sherry Bermeo, T. J. Brunette, Vikram Khipple Mulligan, Lauren P. Carter, Frank DiMaio, Nikolaos G. Sgourakis, Vicki H. Wysocki, David Baker
Programmable design of orthogonal protein heterodimers. Nat. 565 (7737) (2019)
Brian Koepnick, Jeff Flatten, Tamir Husain, Alex Ford, Daniel-Adriano Silva, Matthew J. Bick, Aaron Bauer, Gaohua Liu, Yojiro Ishida, Alexander Boykov, Roger D. Estep, Susan Kleinfelter, Toke Nørgård-Solano, Linda Wei, Foldit players, Gaetano T. Montelione, Frank DiMaio, Zoran Popovic, Firas Khatib, Seth Cooper, David Baker
De novo protein design by citizen scientists. Nat. 570 (7761) (2019)
Stefan Schoebel, Wei Mi, Alexander Stein, Sergey Ovchinnikov, Ryan E. Pavlovicz, Frank DiMaio, David Baker, Melissa G. Chambers, Huayou Su, Dongsheng Li, Tom A. Rapoport, Maofu Liao
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nat. 548 (7667) (2017)
Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik
Spherical-harmonic decomposition for molecular recognition in electron-density maps. Int. J. Data Min. Bioinform. 3 (2) (2009)
Frank DiMaio, Dmitry A. Kondrashov, Eduard Bitto, Ameet Soni, Craig A. Bingman, George N. Phillips Jr., Jude W. Shavlik
Creating protein models from electron-density maps using particle-filtering methods. Bioinform. 23 (21) (2007)
Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik
Improved Methods for Template-Matching in Electron-Density Maps Using Spherical Harmonics. BIBM (2007)
Frank DiMaio, Jude W. Shavlik
Belief Propagation in Large, Highly Connected Graphs for 3D Part-Based Object Recognition. ICDM (2006)
Frank DiMaio, Jude W. Shavlik, George N. Phillips
A probabilistic approach to protein backbone tracing in electron density maps. ISMB (Supplement of Bioinformatics) (2006)
Frank DiMaio, Jude W. Shavlik
Learning an Approximation to Inductive Logic Programming Clause Evaluation. ILP (2004)
Denis Gopan, Frank DiMaio, Nurit Dor, Thomas W. Reps, Shmuel Sagiv
Numeric Domains with Summarized Dimensions. TACAS (2004)
Frank DiMaio, Jude W. Shavlik, George N. Phillips
Pictorial Structures for Molecular Modeling: Interpreting Density Maps. NIPS (2004)