Clifford A. Meyer

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 7

Top Topics

High Dimensionality

Quality Control

Top Venues

Nucleic Acids Res.

Publications

Sehi L'Yi, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown, Clifford A. Meyer, Nils Gehlenborg
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data. Bioinform. 39 (2) (2023)
Rongbin Zheng, Xin Dong, Changxin Wan, Xiaoying Shi, Xiaoyan Zhang, Clifford A. Meyer
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data. Quant. Biol. 8 (3) (2020)
Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res. 47 (Database-Issue) (2019)
Shaojuan Li, Changxin Wan, Rongbin Zheng, Jingyu Fan, Xin Dong, Clifford A. Meyer, Xiaole Shirley Liu
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang, Clifford A. Meyer, Wei Li, Myles Brown, Xiaole Shirley Liu
Improved design and analysis of CRISPR knockout screens. Bioinform. 34 (23) (2018)
Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acids Res. 45 (Database-Issue) (2017)
Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinform. 17 (2016)
Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data. Bioinform. 28 (21) (2012)
Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data. Nucleic Acids Res. 39 (Database-Issue) (2011)
Clifford A. Meyer, Housheng H. He, Myles Brown, Xiaole Shirley Liu
BINOCh: binding inference from nucleosome occupancy changes. Bioinform. 27 (13) (2011)
Christodoulos A. Floudas, Ioannis G. Akrotirianakis, S. Caratzoulas, Clifford A. Meyer, Josef Kallrath
Global optimization in the 21st century: Advances and challenges. Comput. Chem. Eng. 29 (6) (2005)
Clifford A. Meyer, Christodoulos A. Floudas
Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimators. J. Glob. Optim. 32 (2) (2005)
Wei Li, Clifford A. Meyer, Xiaole Shirley Liu
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. ISMB (Supplement of Bioinformatics) (2005)
Clifford A. Meyer, Christodoulos A. Floudas
Convex envelopes for edge-concave functions. Math. Program. 103 (2) (2005)
Clifford A. Meyer, Christodoulos A. Floudas
Trilinear Monomials with Mixed Sign Domains: Facets of the Convex and Concave Envelopes. J. Glob. Optim. 29 (2) (2004)