Yong Zhang

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 8

Top Topics

Transcription Factors

Quality Control

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Yanhong Xiong, Shiyu Li, Yuxuan Zhang, Qianqian Chen, Mengtan Xing, Yong Zhang, Qi Wang
MechanoBase: a comprehensive database for the mechanics of tissues and cells. Database J. Biol. Databases Curation 2024 (2024)
Xiaolan Chen, Hui Yang, Guifen Liu, Yong Zhang
NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes. BMC Bioinform. 22 (1) (2021)
Chengchen Zhao, Wenchao Xiu, Yuwei Hua, Naiqian Zhang, Yong Zhang
CStreet: a computed Cell State trajectory inference method for time-series single-cell RNA sequencing data. Bioinform. 37 (21) (2021)
Shiyang Zeng, Yuwei Hua, Yong Zhang, Guifen Liu, Chengchen Zhao
GLEANER: a web server for GermLine cycle Expression ANalysis and Epigenetic Roadmap visualization. BMC Bioinform. 22 (1) (2021)
Weiguang Li, Juan Zhu, Yong Zhang, Shuyan Zhang
Design and implementation of intelligent traffic and big data mining system based on internet of things. J. Intell. Fuzzy Syst. 38 (2) (2020)
Guanghui Zhu, Hui Yang, Xiao Chen, Jun Wu, Yong Zhang, Xing-Ming Zhao
CSTEA: a webserver for the Cell State Transition Expression Atlas. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinform. 17 (2016)
Xiao Huo, Sheng'en Hu, Chengchen Zhao, Yong Zhang
Dr.seq: a quality control and analysis pipeline for droplet sequencing. Bioinform. 32 (14) (2016)
Qixuan Wang, Jinyan Huang, Hanfei Sun, Jing Liu, Juan Wang, Qian Wang, Qian Qin, Shenglin Mei, Chengchen Zhao, Xiaoqin Yang, Xiaole Shirley Liu, Yong Zhang
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse. Nucleic Acids Res. 42 (Database-Issue) (2014)
Hyunjin Shin, Tao Liu, Xikun Duan, Yong Zhang, Xiaole Shirley Liu
Computational methodology for ChIP-seq analysis. Quant. Biol. 1 (1) (2013)
Hanfei Sun, Bo Qin, Tao Liu, Qixuan Wang, Jing Liu, Juan Wang, Xueqiu Lin, Yulin Yang, Len Taing, Prakash K. Rao, Myles Brown, Yong Zhang, Henry Long, Xiaole Shirley Liu
CistromeFinder for ChIP-seq and DNase-seq data reuse. Bioinform. 29 (10) (2013)
Xueqiu Lin, Deqiang Sun, Benjamin Rodriguez, Qian Zhao, Hanfei Sun, Yong Zhang, Wei Li
BSeQC: quality control of bisulfite sequencing experiments. Bioinform. 29 (24) (2013)
Kai Fu, Qianzi Tang, Jianxing Feng, Xiaole Shirley Liu, Yong Zhang
DiNuP: a systematic approach to identify regions of differential nucleosome positioning. Bioinform. 28 (15) (2012)
Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu, Xiaole Shirley Liu, Yong Zhang
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data. Bioinform. 28 (21) (2012)
Bo Qin, Meng Zhou, Ying Ge, Len Taing, Tao Liu, Qian Wang, Su Wang, Junsheng Chen, Lingling Shen, Xikun Duan, Sheng'en Hu, Wei Li, Henry Long, Yong Zhang, Xiaole Shirley Liu
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinform. 28 (10) (2012)
Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Meyer, Yong Zhang, Zhi Chen, Cheng Li, Xiaole Shirley Liu
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data. Nucleic Acids Res. 39 (Database-Issue) (2011)
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis. BMC Bioinform. 7 (2006)
Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Res. 34 (Database-Issue) (2006)
Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen
Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors. PLoS Comput. Biol. 2 (5) (2006)
Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen
NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res. 33 (Database-Issue) (2005)
Yong Zhang, Zhihua Zhang, Lunjiang Ling, Baochen Shi, Runsheng Chen
Conservation analysis of small RNA genes in Escherichia coli. Bioinform. 20 (5) (2004)