Bin Liu

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 64

Top Topics

Support Vector Machine

Protein Fold Recognition

Top Venues

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Comput. Biol. Medicine

Publications

Yihe Pang, Bin Liu
TransDFL: Identification of Disordered Flexible Linkers in Proteins by Transfer Learning. Genom. Proteom. Bioinform. 21 (2) (2023)
Jialu Hou, Hang Wei, Bin Liu
iPiDA-SWGCN: Identification of piRNA-disease associations based on Supplementarily Weighted Graph Convolutional Network. PLoS Comput. Biol. 19 (6) (2023)
Ke Yan, Hongwu Lv, Yichen Guo, Wei Peng, Bin Liu
sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure. Bioinform. 39 (1) (2023)
Ning Wang, Jun Zhang, Bin Liu
iDRBP-EL: Identifying DNA- and RNA- Binding Proteins Based on Hierarchical Ensemble Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Zhourun Wu, Mingyue Guo, Xiaopeng Jin, Junjie Chen, Bin Liu
CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction. Bioinform. 39 (3) (2023)
Ke Yan, Hongwu Lv, Jie Wen, Yichen Guo, Yong Xu, Bin Liu
PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked Ensemble Learing. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Qi Liang, Wenxiang Zhang, Hao Wu, Bin Liu
LncRNA-disease association identification using graph auto-encoder and learning to rank. Briefings Bioinform. 24 (1) (2023)
Wenxiang Zhang, Bin Liu
iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Tao Bai, Ke Yan, Bin Liu
DAmiRLocGNet: miRNA subcellular localization prediction by combining miRNA-disease associations and graph convolutional networks. Briefings Bioinform. 24 (4) (2023)
Ke Yan, Yichen Guo, Bin Liu
PreTP-2L: identification of therapeutic peptides and their types using two-layer ensemble learning framework. Bioinform. 39 (4) (2023)
Ning Wang, Ke Yan, Jun Zhang, Bin Liu
iDRNA-ITF: identifying DNA- and RNA-binding residues in proteins based on induction and transfer framework. Briefings Bioinform. 23 (4) (2022)
Xiaopeng Jin, Xiaoling Luo, Bin Liu
PHR-search: a search framework for protein remote homology detection based on the predicted protein hierarchical relationships. Briefings Bioinform. 23 (2) (2022)
Yihe Pang, Bin Liu
SelfAT-Fold: Protein Fold Recognition Based on Residue-Based and Motif-Based Self-Attention Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Jiangyi Shao, JunJie Chen, Bin Liu
ProtRe-CN: Protein Remote Homology Detection by Combining Classification Methods and Network Methods via Learning to Rank. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Ke Yan, Hongwu Lv, Yichen Guo, Yongyong Chen, Hao Wu, Bin Liu
TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model. Bioinform. 38 (10) (2022)
Yi-Jun Tang, Yihe Pang, Bin Liu
DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network. Bioinform. 38 (5) (2022)
Jun Zhang, Ke Yan, Qingcai Chen, Bin Liu
PreRBP-TL: prediction of species-specific RNA-binding proteins based on transfer learning. Bioinform. 38 (8) (2022)
Hongwu Lv, Ke Yan, Yichen Guo, Quan Zou, Abd El-Latif Hesham, Bin Liu
AMPpred-EL: An effective antimicrobial peptide prediction model based on ensemble learning. Comput. Biol. Medicine 146 (2022)
Xiaopeng Jin, Xiaoling Luo, Bin Liu
Correction to: PHR-search: a search framework for protein remote homology detection based on the predicted protein hierarchical relationships. Briefings Bioinform. 23 (2) (2022)
Jiawei Feng, Ning Wang, Jun Zhang, Bin Liu
iDRBP-ECHF: Identifying DNA- and RNA-binding proteins based on extensible cubic hybrid framework. Comput. Biol. Medicine 149 (2022)
Wenxiang Zhang, Hang Wei, Bin Liu
idenMD-NRF: a ranking framework for miRNA-disease association identification. Briefings Bioinform. 23 (4) (2022)
Hao Wu, Qi Liang, Wenxiang Zhang, Quan Zou, Abd El-Latif Hesham, Bin Liu
iLncDA-LTR: Identification of lncRNA-disease associations by learning to rank. Comput. Biol. Medicine 146 (2022)
Ning Wang, Jun Zhang, Bin Liu
IDRBP-PPCT: Identifying Nucleic Acid-Binding Proteins Based on Position-Specific Score Matrix and Position-Specific Frequency Matrix Cross Transformation. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Yichen Guo, Ke Yan, Hongwu Lv, Bin Liu
PreTP-EL: prediction of therapeutic peptides based on ensemble learning. Briefings Bioinform. 22 (6) (2021)
Jun Zhang, Qingcai Chen, Bin Liu
DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Jiangyi Shao, Ke Yan, Bin Liu
FoldRec-C2C: protein fold recognition by combining cluster-to-cluster model and protein similarity network. Briefings Bioinform. 22 (3) (2021)
Hang Wei, Qing Liao, Bin Liu
iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological Feature Blocks Through Deep Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Ke Yan, Jie Wen, Yong Xu, Bin Liu
MLDH-Fold: Protein fold recognition based on multi-view low-rank modeling. Neurocomputing 421 (2021)
Xiaopeng Jin, Qing Liao, Hang Wei, Jun Zhang, Bin Liu
SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection. Bioinform. 37 (7) (2021)
Xiaopeng Jin, Qing Liao, Bin Liu
S2L-PSIBLAST: a supervised two-layer search framework based on PSI-BLAST for protein remote homology detection. Bioinform. 37 (23) (2021)
Hang Wei, Yong Xu, Bin Liu
iPiDi-PUL: identifying Piwi-interacting RNA-disease associations based on positive unlabeled learning. Briefings Bioinform. 22 (3) (2021)
Xiaopeng Jin, Qing Liao, Bin Liu
PL-search: a profile-link-based search method for protein remote homology detection. Briefings Bioinform. 22 (3) (2021)
Ke Yan, Jie Wen, Jin-Xing Liu, Yong Xu, Bin Liu
Protein Fold Recognition by Combining Support Vector Machines and Pairwise Sequence Similarity Scores. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Ke Yan, Jie Wen, Yong Xu, Bin Liu
Protein Fold Recognition Based on Auto-Weighted Multi-View Graph Embedding Learning Model. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Zhourun Wu, Qing Liao, Bin Liu
idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation. Briefings Bioinform. 22 (2) (2021)
Hang Wei, Yong Xu, Bin Liu
iCircDA-LTR: identification of circRNA-disease associations based on Learning to Rank. Bioinform. 37 (19) (2021)
Bin Liu, Shuangyan Jiang, Quan Zou
HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search. Briefings Bioinform. 21 (1) (2020)
Bin Liu, Yulin Zhu, Ke Yan
Fold-LTR-TCP: protein fold recognition based on triadic closure principle. Briefings Bioinform. 21 (6) (2020)
Zhourun Wu, Qing Liao, Bin Liu
A comprehensive review and evaluation of computational methods for identifying protein complexes from protein-protein interaction networks. Briefings Bioinform. 21 (5) (2020)
Bin Liu, Chen-Chen Li, Ke Yan
DeepSVM-fold: protein fold recognition by combining support vector machines and pairwise sequence similarity scores generated by deep learning networks. Briefings Bioinform. 21 (5) (2020)
Bin Liu, Yulin Zhu
ProtDec-LTR3.0: Protein Remote Homology Detection by Incorporating Profile-Based Features Into Learning to Rank. IEEE Access 7 (2019)
Bin Liu
BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches. Briefings Bioinform. 20 (4) (2019)
Ke Yan, Xiaozhao Fang, Yong Xu, Bin Liu
Protein fold recognition based on multi-view modeling. Bioinform. 35 (17) (2019)
Bin Liu, Junjie Chen, Mingyue Guo, Xiaolong Wang
Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Bin Liu, Shumin Li
ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Qing Liao, Mingyue Guo, Bin Liu
Protein Remote Homology Detection Based on Profiles. IWBBIO (1) (2019)
Xin Gao, Donghua Wang, Jun Zhang, Qing Liao, Bin Liu
iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning. IEEE Access 7 (2019)
Jiahai Chen, Yongmin Liu, Qing Liao, Bin Liu
iEsGene-ZCPseKNC: Identify Essential Genes Based on Z Curve Pseudo $k$ -Tuple Nucleotide Composition. IEEE Access 7 (2019)
Yumeng Liu, Xiaolong Wang, Bin Liu
A comprehensive review and comparison of existing computational methods for intrinsically disordered protein and region prediction. Briefings Bioinform. 20 (1) (2019)
Bin Liu, Fan Yang, De-Shuang Huang, Kuo-Chen Chou
iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC. Bioinform. 34 (1) (2018)
Junjie Chen, Mingyue Guo, Xiaolong Wang, Bin Liu
A comprehensive review and comparison of different computational methods for protein remote homology detection. Briefings Bioinform. 19 (2) (2018)
Bin Liu, Fan Weng, De-Shuang Huang, Kuo-Chen Chou
iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC. Bioinform. 34 (18) (2018)
Bin Liu, Kai Li, De-Shuang Huang, Kuo-Chen Chou
iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach. Bioinform. 34 (22) (2018)
Bin Liu, Shanyi Wang, Ren Long, Kuo-Chen Chou
iRSpot-EL: identify recombination spots with an ensemble learning approach. Bioinform. 33 (1) (2017)
Junjie Chen, Mingyue Guo, Shumin Li, Bin Liu
ProtDec-LTR2.0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank. Bioinform. 33 (21) (2017)
Junjie Chen, Mingyue Guo, Xiaolong Wang, Bin Liu
SOFM-Top: Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix. ICIC (2) (2017)
Ke Yan, Yong Xu, Xiaozhao Fang, Chunhou Zheng, Bin Liu
Protein fold recognition based on sparse representation based classification. Artif. Intell. Medicine 79 (2017)
Shumin Li, Junjie Chen, Bin Liu
Protein remote homology detection based on bidirectional long short-term memory. BMC Bioinform. 18 (1) (2017)
Bin Liu, Longyun Fang, Ren Long, Xun Lan, Kuo-Chen Chou
-tuple nucleotide composition. Bioinform. 32 (3) (2016)
Bin Liu, Ren Long, Kuo-Chen Chou
iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework. Bioinform. 32 (16) (2016)
Bin Liu, Fule Liu, Xiaolong Wang, Junjie Chen, Longyun Fang, Kuo-Chen Chou
Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Bin Liu, Junjie Chen, Xiaolong Wang
Application of learning to rank to protein remote homology detection. Bioinform. 31 (21) (2015)
Ruifeng Xu, Tao Chen, Yunqing Xia, Qin Lu, Bin Liu, Xuan Wang
Word Embedding Composition for Data Imbalances in Sentiment and Emotion Classification. Cogn. Comput. 7 (2) (2015)
Bin Liu, Fule Liu, Longyun Fang, Xiaolong Wang, Kuo-Chen Chou
repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects. Bioinform. 31 (8) (2015)
Lin Gui, Ruifeng Xu, Qin Lu, Jun Xu, Jian Xu, Bin Liu, Xiaolong Wang
Cross-lingual Opinion Analysis via Negative Transfer Detection. ACL (2) (2014)
Bin Liu, Jinghao Xu, Quan Zou, Ruifeng Xu, Xiaolong Wang, Qingcai Chen
Using distances between Top-n-gram and residue pairs for protein remote homology detection. BMC Bioinform. 15 (S-2) (2014)
Yiding Wang, Ruifeng Xu, Bin Liu, Lin Gui, Bin Tang
A Storm-Based Real-Time Micro-Blogging Burst Event Detection System. ICMLC (CCIS volume) (2014)
Qiaoyun Qiu, Ruifeng Xu, Bin Liu, Lin Gui, Yu Zhou
Credibility Estimation of Stock Comments Based on Publisher and Information Uncertainty Evaluation. ICMLC (CCIS volume) (2014)
Lin Gui, Li Yuan, Ruifeng Xu, Bin Liu, Qin Lu, Yu Zhou
Emotion Cause Detection with Linguistic Construction in Chinese Weibo Text. NLPCC (2014)
Bin Liu, Deyuan Zhang, Ruifeng Xu, Jinghao Xu, Xiaolong Wang, Qingcai Chen, Qiwen Dong, Kuo-Chen Chou
Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinform. 30 (4) (2014)
Yuanlin Yao, Ruifeng Xu, Qin Lu, Bin Liu, Jun Xu, Chengtian Zou, Li Yuan, Shuwei Wang, Lin Yao, Zhenyu He
Reader Emotion Prediction Using Concept and Concept Sequence Features in News Headlines. CICLing (2) (2014)
Shuwei Wang, Ruifeng Xu, Bin Liu, Lin Gui, Yu Zhou
Financial named entity recognition based on conditional random fields and information entropy. ICMLC (2014)
Tao Chen, Ruifeng Xu, Qin Lu, Bin Liu, Jun Xu, Lin Yao, Zhenyu He
A Sentence Vector Based Over-Sampling Method for Imbalanced Emotion Classification. CICLing (2) (2014)
Lei Lin, Bin Liu, Xiaolong Wang, Xuan Wang, Buzhou Tang
Protein Remote Homology Detection and Fold Recognition based on Features Extracted from Frequency Profiles. J. Comput. 6 (2) (2011)
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan Wang
Exploiting three kinds of interface propensities to identify protein binding sites. Comput. Biol. Chem. 33 (4) (2009)
Bin Liu, Lei Lin, Xiaolong Wang, Xuan Wang, Yi Shen
Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring Matrixes. BIBM (2009)
Bin Liu, Lei Lin, Xiaolong Wang, Xuan Wang
Protein Remote Homology Detection Using Order Profiles. IJCBS (2009)
Bin Liu, Xiaolong Wang, Lei Lin, Buzhou Tang, Qiwen Dong, Xuan Wang
Prediction of protein binding sites in protein structures using hidden Markov support vector machine. BMC Bioinform. 10 (2009)
Bin Liu, Lei Lin, Xiaolong Wang, Qiwen Dong, Xuan Wang
A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles. BIRD (2008)
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan Wang
-grams and latent semantic analysis. BMC Bioinform. 9 (2008)