Ali R. Khan

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 16

Top Topics

Magnetic Resonance

Gaussian Mixture Modeling

Top Venues

Int. J. Comput. Assist. Radiol. Surg.

IEEE Trans. Biomed. Eng.

Medical Imaging: Image Processing

Publications

Feyi Ogunsanya, Alaa Taha, Greydon Gilmore, Jason Kai, Tristan Kuehn, Arun Thurairajah, Mauricio C. Tenorio, Ali R. Khan, Jonathan C. Lau
MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs. Int. J. Comput. Assist. Radiol. Surg. 19 (7) (2024)
Emily S. Nichols, Susana Correa, Peter Van Dyken, Jason Kai, Tristan Kuehn, Sandrine de Ribaupierre, Emma G. Duerden, Ali R. Khan
Funcmasker-flex: An Automated BIDS-App for Brain Segmentation of Human Fetal Functional MRI data. Neuroinformatics 21 (3) (2023)
Jason Kai, Ali R. Khan
Assessing the Reliability of Template-Based Clustering for Tractography in Healthy Human Adults. Frontiers Neuroinformatics 16 (2022)
Jason Kai, Ali R. Khan, Roy A. M. Haast, Jonathan C. Lau
diffusion MRI: Feasibility and reliability. NeuroImage 262 (2022)
Yiming Xiao, Jonathan C. Lau, Dimuthu Hemachandra, Greydon Gilmore, Ali R. Khan, Terry M. Peters
Image Guidance in Deep Brain Stimulation Surgery to Treat Parkinson's Disease: A Comprehensive Review. IEEE Trans. Biomed. Eng. 68 (3) (2021)
Roy A. M. Haast, Jonathan C. Lau, Dimo Ivanov, Ravi S. Menon, Kâmil Uludag, Ali R. Khan
reproducibility and hippocampal morphometry at 7T. NeuroImage 224 (2021)
Yiming Xiao, Jonathan C. Lau, Dimuthu Hemachandra, Greydon Gilmore, Ali R. Khan, Terry M. Peters
Corrections to "Image Guidance in Deep Brain Stimulation Surgery to Treat Parkinson's Disease: A Comprehensive Review". IEEE Trans. Biomed. Eng. 68 (5) (2021)
Jordan DeKraker, Jonathan C. Lau, Kayla M. Ferko, Ali R. Khan, Stefan Köhler
Hippocampal subfields revealed through unfolding and unsupervised clustering of laminar and morphological features in 3D BigBrain. NeuroImage 206 (2020)
Terry M. Peters, Caroline Essert, Ali R. Khan
IJCARS: MICCAI 2019 special issue. Int. J. Comput. Assist. Radiol. Surg. 15 (11) (2020)
Jordan DeKraker, Kayla M. Ferko, Jonathan C. Lau, Stefan Köhler, Ali R. Khan
Unfolding the hippocampus: An intrinsic coordinate system for subfield segmentations and quantitative mapping. NeuroImage 167 (2018)
Jonathan C. Lau, Ali R. Khan, Tony Y. Zeng, Keith W. MacDougall, Andrew G. Parrent, Terry M. Peters
Quantification of local geometric distortion in structural magnetic resonance images: Application to ultra-high fields. NeuroImage 168 (2018)
Brian T. Wang, Stefan Poirier, Ting Guo, Andrew G. Parrent, Terry M. Peters, Ali R. Khan
Generation and evaluation of an ultra-high-field atlas with applications in DBS planning. Medical Imaging: Image Processing (2016)
Martin Rajchl, John S. H. Baxter, A. Jonathan McLeod, Jing Yuan, Wu Qiu, Terry M. Peters, Ali R. Khan
Hierarchical max-flow segmentation framework for multi-atlas segmentation with Kohonen self-organizing map based Gaussian mixture modeling. Medical Image Anal. 27 (2016)
Martin Rajchl, John S. H. Baxter, Wu Qiu, Ali R. Khan, Aaron Fenster, Terry M. Peters, Daniel Rueckert, Jing Yuan
Fast Deformable Image Registration with Non-smooth Dual Optimization. CVPR Workshops (2016)
Utsav Pardasani, John S. H. Baxter, Terry M. Peters, Ali R. Khan
Single slice US-MRI registration for neurosurgical MRI-guided US. Medical Imaging: Image-Guided Procedures (2016)
Diego Cantor-Rivera, John S. H. Baxter, Sandrine de Ribaupierre, Jonathan C. Lau, Seyed M. Mirsattari, Maged Goubran, Jorge G. Burneo, David A. Steven, Terry M. Peters, Ali R. Khan
Individual feature maps: a patient-specific analysis tool with applications in temporal lobe epilepsy. Int. J. Comput. Assist. Radiol. Surg. 11 (1) (2016)
Adriënne M. Mendrik, Koen L. Vincken, Hugo J. Kuijf, Marcel Breeuwer, Willem H. Bouvy, Jeroen de Bresser, Amir Alansary, Marleen de Bruijne, Aaron Carass, Ayman El-Baz, Amod Jog, Ranveer Katyal, Ali R. Khan, Fedde van der Lijn, Qaiser Mahmood, Ryan Mukherjee, Annegreet van Opbroek, Sahil Paneri, Sérgio Pereira, Mikael Persson, Martin Rajchl, Duygu Sarikaya, Örjan Smedby, Carlos A. Silva, Henri A. Vrooman, Saurabh Vyas, Chunliang Wang, Liang Zhao, Geert Jan Biessels, Max A. Viergever
MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans. Comput. Intell. Neurosci. 2015 (2015)
Kamyar Abhari, John S. H. Baxter, Ali R. Khan, Terry M. Peters, Sandrine de Ribaupierre, Roy Eagleson
Visual Enhancement of MR Angiography Images to Facilitate Planning of Arteriovenous Malformation Interventions. ACM Trans. Appl. Percept. 12 (1) (2015)
Kamyar Abhari, John S. H. Baxter, Elvis C. S. Chen, Ali R. Khan, Terry M. Peters, Sandrine de Ribaupierre, Roy Eagleson
Training for Planning Tumour Resection: Augmented Reality and Human Factors. IEEE Trans. Biomed. Eng. 62 (6) (2015)
Diego Cantor-Rivera, Ali R. Khan, Maged Goubran, Seyed M. Mirsattari, Terry M. Peters
Detection of temporal lobe epilepsy using support vector machines in multi-parametric quantitative MR imaging. Comput. Medical Imaging Graph. 41 (2015)
John S. H. Baxter, Martin Rajchl, A. Jonathan McLeod, Ali R. Khan, Jing Yuan, Terry M. Peters
Smoothness parameter tuning for generalized hierarchical continuous max-flow segmentation. Medical Imaging: Image Processing (2014)
Martin Rajchl, John S. H. Baxter, Wu Qiu, Ali R. Khan, Aaron Fenster, Terry M. Peters, Jing Yuan
RANCOR: Non-Linear Image Registration with Total Variation Regularization. CoRR (2014)
Ali R. Khan, Lei Wang, Mirza Faisal Beg
Multistructure Large Deformation Diffeomorphic Brain Registration. IEEE Trans. Biomed. Eng. 60 (2) (2013)
Maged Goubran, Cathie Crukley, Sandrine de Ribaupierre, Terence M. Peters, Ali R. Khan
Image registration of ex-vivo MRI to sparsely sectioned histology of hippocampal and neocortical temporal lobe specimens. NeuroImage 83 (2013)
Kamyar Abhari, John S. H. Baxter, Elvis C. S. Chen, Ali R. Khan, Chris Wedlake, Terry M. Peters, Roy Eagleson, Sandrine de Ribaupierre
The Role of Augmented Reality in Training the Planning of Brain Tumor Resection. AE-CAI (2013)
Maged Goubran, Ali R. Khan, Cathie Crukley, Susan Buchanan, Brendan Santyr, Sandrine de Ribaupierre, Terry M. Peters
Robust registration of sparsely sectioned histology to ex-vivo MRI of temporal lobe resections. Medical Imaging: Image Processing (2012)
Kamyar Abhari, John S. H. Baxter, Elvis C. S. Chen, Ali R. Khan, Chris Wedlake, Terry M. Peters, Sandrine de Ribaupierre, Roy Eagleson
Use of a Mixed-Reality System to Improve the Planning of Brain Tumour Resections: Preliminary Results. AE-CAI (2012)
Ali R. Khan, Nicolas Cherbuin, Wei Wen, Kaarin Anstey, Perminder S. Sachdev, Mirza Faisal Beg
Optimal weights for local multi-atlas fusion using supervised learning and dynamic information (SuperDyn): Validation on hippocampus segmentation. NeuroImage 56 (1) (2011)
Jingyun Chen, Ali R. Khan, Martin J. McKeown, Mirza Faisal Beg
Momentum-based morphometric analysis with application to Parkinson's disease. Medical Imaging: Image-Guided Procedures (2011)
Mirza Faisal Beg, Stephen Wong, Ali R. Khan, Teresa Cheung, Naznin Virji-Babul, Anthony Herdman
External landmark and head-shape-based functional data normalization. Comput. Medical Imaging Graph. 33 (7) (2009)
Eli Gibson, Ali R. Khan, Mirza Faisal Beg
A Combined Surface And VOlumetric Registration (SAVOR) Framework to Study Cortical Biomarkers and Volumetric Imaging Data. MICCAI (1) (2009)
Jingyun Chen, Samantha J. Palmer, Ali R. Khan, Martin J. McKeown, Mirza Faisal Beg
Freesurfer-initialized large deformation diffeomorphic metric mapping with application to Parkinson's disease. Medical Imaging: Image Processing (2009)
Ali R. Khan, Moo K. Chung, Mirza Faisal Beg
Robust Atlas-Based Brain Segmentation Using Multi-structure Confidence-Weighted Registration. MICCAI (1) (2009)
Ali R. Khan, Mirza Faisal Beg
Representation of time-varying shapes in the large deformation diffeomorphic framework. ISBI (2008)
Ali R. Khan, Lei Wang, Mirza Faisal Beg
FreeSurfer-initiated fully-automated subcortical brain segmentation in MRI using Large Deformation Diffeomorphic Metric Mapping. NeuroImage 41 (3) (2008)
Mirza Faisal Beg, Ali R. Khan
Symmetric Data Attachment Terms for Large Deformation Image Registration. IEEE Trans. Medical Imaging 26 (9) (2007)
Mirza Faisal Beg, Ali R. Khan
Computing an average anatomical atlas using LDDMM and geodesic shooting. ISBI (2006)
Ali R. Khan, Elizabeth H. Aylward, Patrick Barta, Michael I. Miller, Mirza Faisal Beg
Semi-automated Basal Ganglia Segmentation Using Large Deformation Diffeomorphic Metric Mapping. MICCAI (2005)