Alfonso Rodríguez-Patón

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 25

Top Topics

Fingerprint Recognition

Top Venues

Briefings Bioinform.

Publications

Xue Li, Peifu Han, Wenqi Chen, Changnan Gao, Shuang Wang, Tao Song, Muyuan Niu, Alfonso Rodríguez-Patón
MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. Briefings Bioinform. 24 (1) (2023)
Xudong Zhang, Gan Wang, Xiangyu Meng, Shuang Wang, Ying Zhang, Alfonso Rodríguez-Patón, Jianmin Wang, Xun Wang
Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction. Briefings Bioinform. 23 (5) (2022)
Shudong Wang, Zhenzhen Du, Mao Ding, Alfonso Rodríguez-Patón, Tao Song
KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer's disease drug repositions. Appl. Intell. 52 (1) (2022)
Shanchen Pang, Ying Zhang, Tao Song, Xudong Zhang, Xun Wang, Alfonso Rodríguez-Patón
AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction. Briefings Bioinform. 23 (1) (2022)
Bosheng Song, Xiangxiang Zeng, Alfonso Rodríguez-Patón
Monodirectional tissue P systems with channel states. Inf. Sci. 546 (2021)
Francis George C. Cabarle, Xiangxiang Zeng, Niall Murphy, Tao Song, Alfonso Rodríguez-Patón, Xiangrong Liu
Neural-like P systems with plasmids. Inf. Comput. 281 (2021)
Xiangxiang Zeng, Yinglai Lin, Yuying He, Linyuan Lü, Xiaoping Min, Alfonso Rodríguez-Patón
Deep Collaborative Filtering for Prediction of Disease Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (5) (2020)
Shudong Wang, Zhenzhen Du, Mao Ding, Renteng Zhao, Alfonso Rodríguez-Patón, Tao Song
LDCNN-DTI: A Novel Light Deep Convolutional Neural Network for Drug-Target Interaction Predictions. BIBM (2020)
Xiangrong Liu, Zengyan Hong, Juan Liu, Yuan Lin, Alfonso Rodríguez-Patón, Quan Zou, Xiangxiang Zeng
Computational methods for identifying the critical nodes in biological networks. Briefings Bioinform. 21 (2) (2020)
Antonio Prestes García, Alfonso Rodríguez-Patón
Applying Evolutionary Metaheuristics for Parameter Estimation of Individual-Based Models. CoRR (2020)
Tongmao Ma, Shaohua Hao, Xun Wang, Alfonso Rodríguez-Patón, Shudong Wang, Tao Song
Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition. IEEE Access 7 (2019)
Xuan Zhang, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
Meta-Path Methods for Prioritizing Candidate Disease miRNAs. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Tao Song, Shanchen Pang, Shaohua Hao, Alfonso Rodríguez-Patón, Pan Zheng
A Parallel Image Skeletonizing Method Using Spiking Neural P Systems with Weights. Neural Process. Lett. 50 (2) (2019)
Tao Song, Fan Meng, Alfonso Rodríguez-Patón, Pibao Li, Pan Zheng, Xun Wang
U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images. IEEE Access 7 (2019)
Shanchen Pang, Tong Ding, Alfonso Rodríguez-Patón, Tao Song, Pan Zheng
A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment. IEEE Access 6 (2018)
Tao Song, Alfonso Rodríguez-Patón, Pan Zheng, Xiangxiang Zeng
Spiking Neural P Systems With Colored Spikes. IEEE Trans. Cogn. Dev. Syst. 10 (4) (2018)
Xiangxiang Zeng, Jiawei Lin, Chen Lin, Xiangrong Liu, Alfonso Rodríguez-Patón
Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets. IEEE Access 6 (2018)
Hongjie Chen, Xun Wang, Xuan Zhang, Xiangxiang Zeng, Tao Song, Alfonso Rodríguez-Patón
LncRNA-disease association prediction based on neighborhood information aggregation in neural network. BIBM (2018)
Matteo Cavaliere, Alfonso Rodríguez-Patón
Preface. Nat. Comput. 17 (4) (2018)
Xiaoshan Yan, Xiangrong Liu, Xiangxiang Zeng, Alfonso Rodríguez-Patón
An Implementation of Elementary Arithmetic with Virus Machine. Enjoying Natural Computing (2018)
David Benes, Alfonso Rodríguez-Patón, Petr Sosík
Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments. Nat. Comput. 16 (3) (2017)
P. Martín Gutiérrez, Alfonso Rodríguez-Patón
Simulating multicell populations with an accelerated gro simulator. ECAL (2017)
Andrei Paun, Alfonso Rodríguez-Patón
P Systems Simulating Bacterial Conjugation: Universality and Properties. Fundam. Informaticae 153 (1-2) (2017)
Xiangyi Meng, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
Iteratively collective prediction of disease-gene associations through the incomplete network. BIBM (2017)
Antonio Prestes García, Alfonso Rodríguez-Patón
EvoPER - An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast. PeerJ Prepr. 4 (2016)
Antonio Prestes García, Alfonso Rodríguez-Patón
A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation. PACBB (2015)
Antonio Prestes García, Alfonso Rodríguez-Patón
BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation. PAAMS (2015)
David Benes, Petr Sosík, Alfonso Rodríguez-Patón
An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits. Artif. Life 21 (2) (2015)
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
Probabilistic reasoning with a Bayesian DNA device based on strand displacement. Nat. Comput. 13 (4) (2014)
Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík
DNA strand displacement system running logic programs. Biosyst. 115 (2014)
Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón
P systems with proteins on membranes characterize PSPACE. Theor. Comput. Sci. 488 (2013)
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
Probabilistic Reasoning with an Enzyme-Driven DNA Device. DNA (2013)
Niall Murphy, Alfonso Rodríguez-Patón
Distributed Computing with Prokaryotic Immune Systems. ICARIS (2012)
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement. DNA (2012)
Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
DNA biosensors that reason. Biosyst. 109 (2) (2012)
Mihai Ionescu, Gheorghe Paun, Mario J. Pérez-Jiménez, Alfonso Rodríguez-Patón
Spiking Neural P Systems with Several Types of Spikes. Int. J. Comput. Commun. Control 6 (4) (2011)
John Jack, Andrei Paun, Alfonso Rodríguez-Patón
A review of the nondeterministic waiting time algorithm. Nat. Comput. 10 (1) (2011)
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, John Jack
Poster: Biochemical signaling: A discrete simulation with memory enhancement. ICCABS (2011)
Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík
Autonomous Resolution Based on DNA Strand Displacement. DNA (2011)
Pablo Gómez Esteban, Alfonso Rodríguez-Patón
Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton. IWINAC (2) (2011)
Petr Sosík, Alfonso Rodríguez-Patón, Ludek Cienciala
On the Power of Families of Recognizer Spiking Neural P Systems. Int. J. Found. Comput. Sci. 22 (1) (2011)
Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
On the scalability of biocomputing algorithms: The case of the maximum clique problem. Theor. Comput. Sci. 412 (51) (2011)
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, Manuela Sidoroff
P Systems with proteins on Membranes: a Survey. Int. J. Found. Comput. Sci. 22 (1) (2011)
Petr Sosík, Alfonso Rodríguez-Patón, Lucie Ciencialová
Polynomial Complexity Classes in Spiking Neural P Systems. Int. Conf. on Membrane Computing (2010)
Alfonso Rodríguez-Patón, José María Larrea, Iñaki Sainz de Murieta
Inference with DNA Molecules. UC (2010)
Jesús M. Miró Bueno, Alfonso Rodríguez-Patón
Biomolecular Computing Devices in Synthetic Biology. Int. J. Nanotechnol. Mol. Comput. 2 (2) (2010)
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón
On the Hopcroft's minimization technique for DFA and DFCA. Theor. Comput. Sci. 410 (24-25) (2009)
Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík
Spiking Neural P Systems: Stronger Normal Forms. Int. J. Unconv. Comput. 5 (5) (2009)
Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón, David Pérez
On the Power of Computing with Proteins on Membranes. Workshop on Membrane Computing (2009)
Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón
Sequential SNP systems based on min/max spike number. Theor. Comput. Sci. 410 (30-32) (2009)
Jesús M. Miró Bueno, Alfonso Rodríguez-Patón
A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme. IWANN (2) (2009)
John Jack, Alfonso Rodríguez-Patón, Oscar H. Ibarra, Andrei Paun
Discrete Nondeterministic Modeling of the Fas Pathway. Int. J. Found. Comput. Sci. 19 (5) (2008)
Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík
On the power of elementary features in spiking neural P systems. Nat. Comput. 7 (4) (2008)
John Jack, Andrei Paun, Alfonso Rodríguez-Patón
Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation. Workshop on Membrane Computing (2008)
Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón
Hopcroft's Minimization Technique: Queues or Stacks?. CIAA (2008)
Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón
Sequentiality Induced by Spike Number in SNP Systems. DNA (2008)
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
Towards a Robust Biocomputing Solution of Intractable Problems. DNA (2007)
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón
A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids. IWINAC (1) (2007)
Jorge Couchet, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
Crossover and mutation operators for grammar-guided genetic programming. Soft Comput. 11 (10) (2007)
Javier Andrade Garda, Juan Ares Casal, Rafael García, Juan Pazos, Santiago Rodríguez Yánez, Alfonso Rodríguez-Patón, Andrés Silva
Towards a lessons learned system for critical software. Reliab. Eng. Syst. Saf. 92 (7) (2007)
Oscar H. Ibarra, Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón, Petr Sosík, Sara Woodworth
Normal forms for spiking neural P systems. Theor. Comput. Sci. 372 (2-3) (2007)
Petr Sosík, Alfonso Rodríguez-Patón
Membrane computing and complexity theory: A characterization of PSPACE. J. Comput. Syst. Sci. 73 (1) (2007)
Marc García-Arnau, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
Initialization method for grammar-guided genetic programming. Knowl. Based Syst. 20 (2) (2007)
Andrei Paun, Alfonso Rodríguez-Patón
On Flip-Flop Membrane Systems with Proteins. Workshop on Membrane Computing (2007)
Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík
A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem. Biosyst. 90 (3) (2007)
Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón
Evolutionary system for automatically constructing and adapting radial basis function networks. Neurocomputing 69 (16-18) (2006)
Petr Sosík, Alfonso Rodríguez-Patón
P Systems with Active Membranes Characterize PSPACE. DNA (2006)
Hitesh Nagda, Andrei Paun, Alfonso Rodríguez-Patón
P Systems with Symport/Antiport and Time. Workshop on Membrane Computing (2006)
Michael Domaratzki, Petr Sosík, Alfonso Rodríguez-Patón
Algebraic properties of substitution on trajectories. Theor. Comput. Sci. 369 (1-3) (2006)
Marc García-Arnau, Daniel Manrique, J. Ríos, Alfonso Rodríguez-Patón
Initialization Method for Grammar-Guided Genetic Programming. SGAI Conf. (2006)
Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem. Soft Comput. 9 (9) (2005)
Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem. Soft Comput. 9 (9) (2005)
Gheorghe Paun, Mario J. Pérez-Jiménez, Juan Pazos, Alfonso Rodríguez-Patón
Symport/Antiport P Systems with Three Objects Are Universal. Fundam. Informaticae 64 (1-4) (2005)
Daniel Manrique, Fernando Márquez, Juan Rios, Alfonso Rodríguez-Patón
Grammar Based Crossover Operator in Genetic Programming. IWINAC (2) (2005)
Lucas Ledesma, Juan Pazos, Alfonso Rodríguez-Patón
A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems. Aspects of Molecular Computing (2004)
Carlos Martín-Vide, Gheorghe Paun, Juan Pazos, Alfonso Rodríguez-Patón
Tissue P systems. Theor. Comput. Sci. 296 (2) (2003)
Carlos Martín-Vide, Alfonso Rodríguez-Patón
Restricted Concatenation Inspired by DNA Strand Assembly Grammars and Automata for String Processing (2003)
Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva
Solving SAT in Linear Time with a Neural-Like Membrane System. IWANN (1) (2003)
Carlos Martín-Vide, Juan Pazos, Gheorghe Paun, Alfonso Rodríguez-Patón
A New Class of Symbolic Abstract Neural Nets: Tissue P Systems. COCOON (2002)
José Luis Maté, Luis Felipe Paradela, Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva
MEGICO: An Intelligent Knowledge Management Methodology. EKAW (2002)
José Luis Maté, Alfonso Rodríguez-Patón, Andrés Silva
On the Power of P Systems with DNA-Worm-Objects. Fundam. Informaticae 49 (1-3) (2002)
Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón
On P Systems with Membrane Creation. Comput. Sci. J. Moldova 9 (2) (2001)
Alfonso Rodríguez-Patón
On the Universality of P Systems with Membrane Creation. Bull. EATCS 74 (2001)
Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón
Further Remarks on P Systems with Symport Rules. Sci. Ann. Cuza Univ. 10 (2001)
Jürgen Dassow, Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón
Conditional Concatenation. Fundam. Informaticae 44 (4) (2000)
Juan Castellanos, Gheorghe Paun, Alfonso Rodríguez-Patón
Computing with Membranes: P Systems with Worm-Objects. SPIRE (2000)
Juan Castellanos, S. Leiva, Jose Rodrigo, Alfonso Rodríguez-Patón
Molecular Computation for Genetic Algorithms. Rough Sets and Current Trends in Computing (1998)