A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences.
David J. RussellSamuel F. WayAndrew K. BensonKhalid SayoodPublished in: BMC Bioinform. (2010)
Keyphrases
- distance metric
- metric learning
- distance measure
- data points
- euclidean distance
- distance function
- distance metric learning
- dissimilarity measure
- linear transformation
- knn classification
- unsupervised learning
- mahalanobis distance
- mahalanobis metric
- database
- semidefinite program
- nearest neighbor classification
- similarity search
- pairwise