Zachary B. Abrams

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Topics

Wound Healing Rate

Normalization Method

Machine Learning

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Kriti Bhattarai, Inez Y. Oh, Zachary B. Abrams, Albert M. Lai
Document-level Clinical Entity and Relation Extraction via Knowledge Base-Guided Generation. CoRR (2024)
Abigail E. Lewis, Nicole Gray Weiskopf, Zachary B. Abrams, Randi E. Foraker, Albert M. Lai, Philip R. O. Payne, Aditi Gupta
Electronic health record data quality assessment and tools: a systematic review. J. Am. Medical Informatics Assoc. 30 (10) (2023)
Sayantan Kumar, Sean C. Yu, Thomas George Kannampallil, Zachary B. Abrams, Andrew P. Michelson, Philip R. O. Payne
Self-explaining neural network with concept-based explanations for ICU mortality prediction. BCB (2022)
Zachary B. Abrams, Caitlin E. Coombes, Suli Li, Kevin R. Coombes
Mercator: a pipeline for multi-method, unsupervised visualization and distance generation. Bioinform. 37 (17) (2021)
Zachary B. Abrams, Dwayne G. Tally, Lynne V. Abruzzo, Kevin R. Coombes
RCytoGPS: an R package for reading and visualizing cytogenetics data. Bioinform. 37 (23) (2021)
Zachary B. Abrams, Dwayne G. Tally, Lin Zhang, Caitlin E. Coombes, Philip R. O. Payne, Lynne V. Abruzzo, Kevin R. Coombes
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. BMC Bioinform. 22 (1) (2021)
Caitlin E. Coombes, Xin Liu, Zachary B. Abrams, Kevin R. Coombes, Guy N. Brock
Simulation-derived best practices for clustering clinical data. J. Biomed. Informatics 118 (2021)
Caitlin E. Coombes, Zachary B. Abrams, Samantha Nakayiza, Guy N. Brock, Kevin R. Coombes
Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning. F1000Research 9 (2020)
Caitlin E. Coombes, Zachary B. Abrams, Suli Li, Lynne V. Abruzzo, Kevin R. Coombes
Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Zachary B. Abrams, Lin Zhang, Ricky Rodriguez, Lynne V. Abruzzo, Kevin R. Coombes, Philip R. P. Payne
CytoGPS: A Web-Enabled Karyotype Analysis Tool for Cytogeneticists and Biomedical Data Scientists. AMIA (2020)
Amir Asiaee T., Zachary B. Abrams, Samantha Nakayiza, Deepa Sampath, Kevin R. Coombes
Explaining Gene Expression Using Twenty-One MicroRNAs. J. Comput. Biol. 27 (7) (2020)
Zachary B. Abrams, Travis Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes
A protocol to evaluate RNA sequencing normalization methods. BMC Bioinform. (24) (2019)
Mark R. Zucker, Lynne V. Abruzzo, Carmen D. Herling, Lynn L. Barron, Michael J. Keating, Zachary B. Abrams, Nyla A. Heerema, Kevin R. Coombes
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing. Bioinform. 35 (17) (2019)
Zachary B. Abrams, Lin Zhang, Lynne V. Abruzzo, Nyla A. Heerema, Suli Li, Tom Dillon, Ricky Rodriguez, Kevin R. Coombes, Philip R. O. Payne
CytoGPS: a web-enabled karyotype analysis tool for cytogenetics. Bioinform. 35 (24) (2019)
Mark R. Zucker, Lynne V. Abruzzo, Carmen D. Herling, Lynn L. Barron, Michael J. Keating, Zachary B. Abrams, Nyla A. Heerema, Kevin R. Coombes
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing. Bioinform. 35 (17) (2019)
Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes
Thresher: determining the number of clusters while removing outliers. BMC Bioinform. 19 (1) (2018)
Travis Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang
Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing. PSB (2017)
Tasneem Motiwala, Zachary B. Abrams, Kelly Regan, Bobbie Kite, Gregg M. Gascon, Philip R. O. Payne
Use of Administrative Data to Predict Risk of Liver Disease. CRI (2016)
Kelly Regan, Zachary B. Abrams, Michael Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne
Session Introduction. PSB (2016)
Satyajeet Raje, Zachary B. Abrams, Kevin R. Coombes, Philip R. O. Payne
Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration. CRI (2016)
Zachary B. Abrams, Satyajeet Raje
KaryoViz: Designing A Karyotype Visualization Platform for Clinical Decision Support. AMIA (2015)
Zachary B. Abrams, Andrea L. Peabody, Nyla A. Heerema, Philip R. O. Payne
Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts. MedInfo (2015)