Wei Zhang

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 20

Top Topics

Data Representation

Sequence Alignment

Top Venues

Briefings Bioinform.

Publications

Ehtesamul Azim, Dongjie Wang, Kunpeng Liu, Wei Zhang, Yanjie Fu
Feature Interaction Aware Automated Data Representation Transformation. SDM (2024)
Fan Zhang, Amitesh Sridharan, Wangxin He, Injune Yeo, Maximilian Liehr, Wei Zhang, Nathaniel C. Cady, Yu Cao, Jae-Sun Seo, Deliang Fan
A 65-nm RRAM Compute-in-Memory Macro for Genome Processing. IEEE J. Solid State Circuits 59 (7) (2024)
Khandakar Tanvir Ahmed, Sze Cheng, Qian Li, Jeongsik Yong, Wei Zhang
Incomplete time-series gene expression in integrative study for islet autoimmunity prediction. Briefings Bioinform. 24 (1) (2023)
Fan Zhang, Shaahin Angizi, Jiao Sun, Wei Zhang, Deliang Fan
Aligner-D: Leveraging In-DRAM Computing to Accelerate DNA Short Read Alignment. IEEE J. Emerg. Sel. Topics Circuits Syst. 13 (1) (2023)
Qibing Jiang, Praneeth Sudalagunta, Maria C. Silva, Rafael R. Canevarolo, Xiaohong Zhao, Khandakar Tanvir Ahmed, Raghunandan Reddy Alugubelli, Gabriel Deavila, Alexandre Tungesvik, Lia Perez, Robert A. Gatenby, Robert J. Gillies, Rachid Baz, Mark B. Meads, Kenneth H. Shain, Ariosto Siqueira Silva, Wei Zhang
CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation. Bioinform. 38 (16) (2022)
Naima Ahmed Fahmi, Khandakar Tanvir Ahmed, Jae-Woong Chang, Heba Nassereddeen, Deliang Fan, Jeongsik Yong, Wei Zhang
APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data. BMC Bioinform. (3) (2022)
Khandakar Tanvir Ahmed, Jiao Sun, William Chen, Irene Martinez, Sze Cheng, Wencai Zhang, Jeongsik Yong, Wei Zhang
In silico model for miRNA-mediated regulatory network in cancer. Briefings Bioinform. 22 (6) (2021)
Fan Zhang, Shaahin Angizi, Naima Ahmed Fahmi, Wei Zhang, Deliang Fan
PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification. DAC (2021)
Khandakar Tanvir Ahmed, Jiao Sun, Sze Cheng, Jeongsik Yong, Wei Zhang
Multi-omics data integration by generative adversarial network. Bioinform. 38 (1) (2021)
Jiao Sun, Jae-Woong Chang, Teng Zhang, Jeongsik Yong, Rui Kuang, Wei Zhang
Platform-integrated mRNA isoform quantification. Bioinform. 36 (8) (2020)
Shaahin Angizi, Naima Ahmed Fahmi, Wei Zhang, Deliang Fan
PIM-Assembler: A Processing-in-Memory Platform for Genome Assembly. DAC (2020)
Shaahin Angizi, Wei Zhang, Deliang Fan
Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM. ACM Great Lakes Symposium on VLSI (2020)
Zhibo Wang, Zhezhi He, Milan Shah, Teng Zhang, Deliang Fan, Wei Zhang
Network-based multi-task learning models for biomarker selection and cancer outcome prediction. Bioinform. 36 (6) (2020)
Shaahin Angizi, Naima Ahmed Fahmi, Wei Zhang, Deliang Fan
PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly. CoRR (2020)
Shaahin Angizi, Jiao Sun, Wei Zhang, Deliang Fan
PIM-Aligner: A Processing-in-MRAM Platform for Biological Sequence Alignment. DATE (2020)
Shaahin Angizi, Jiao Sun, Wei Zhang, Deliang Fan
AlignS: A Processing-In-Memory Accelerator for DNA Short Read Alignment Leveraging SOT-MRAM. DAC (2019)
Zhuliu Li, Wei Zhang, Rong Stephanie Huang, Rui Kuang
Learning a Low-Rank Tensor of Pharmacogenomic Multi-relations from Biomedical Networks. ICDM (2019)
Shaahin Angizi, Jiao Sun, Wei Zhang, Deliang Fan
GraphS: A Graph Processing Accelerator Leveraging SOT-MRAM. DATE (2019)
Raphael Petegrosso, Wei Zhang, Zhuliu Li, Yousef Saad, Rui Kuang
Low-rank Label Propagation for Semi-supervised Learning with 100 Millions Samples. CoRR (2017)
Wei Zhang, Jae-Woong Chang, Lilong Lin, Kay Minn, Baolin Wu, Jeremy Chien, Jeongsik Yong, Hui Zheng, Rui Kuang
Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis. PLoS Comput. Biol. 11 (12) (2015)
Wei Zhang, Kay Minn, Lilong Lin, Baolin Wu, Jeremy Chien, Hui Zheng, Rui Kuang
Network-based Transcript Quantification with RNA-Seq Data. CoRR (2014)
Wei Zhang, Takayo Ota, Viji Shridhar, Jeremy Chien, Baolin Wu, Rui Kuang
Network-based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment. PLoS Comput. Biol. 9 (3) (2013)
Wei Zhang, Nicholas Johnson, Baolin Wu, Rui Kuang
Signed network propagation for detecting differential gene expressions and DNA copy number variations. BCB (2012)
TaeHyun Hwang, Wei Zhang, Maoqiang Xie, Jinfeng Liu, Rui Kuang
Inferring disease and gene set associations with rank coherence in networks. Bioinform. 27 (19) (2011)
TaeHyun Hwang, Wei Zhang, Maoqiang Xie, Rui Kuang
Inferring Disease and Gene Set Associations with Rank Coherence in Networks CoRR (2011)
Wei Zhang, Baryun Hwang, Baolin Wu, Rui Kuang
Network propagation models for gene selection. GENSiPS (2010)