Wayne Joubert

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 29

Top Topics

Root Mean Squared Error

Correlation Coefficient

Top Venues

Concurr. Comput. Pract. Exp.

Publications

Verónica G. Melesse Vergara, Reuben D. Budiardja, Wayne Joubert
Early experiences evaluating the HPE/Cray ecosystem for AMD GPUs. Concurr. Comput. Pract. Exp. 36 (15) (2024)
Reuben D. Budiardja, Mark A. Berrill, Markus Eisenbach, Gustav R. Jansen, Wayne Joubert, Stephen Nichols, David M. Rogers, Arnold N. Tharrington, O. E. Bronson Messer
Ready for the Frontier: Preparing Applications for the World's First Exascale System. ISC (2023)
Darren J. Hsu, Hao Lu, Aditya Kashi, Michael A. Matheson, John Gounley, Feiyi Wang, Wayne Joubert, Jens Glaser
TwoFold: Highly accurate structure and affinity prediction for protein-ligand complexes from sequences. Int. J. High Perform. Comput. Appl. 37 (6) (2023)
Jean Merlet, John H. Lagergren, Verónica Melesse Vergara, Mikaela Cashman, Christopher E. Bradburne, Raina Plowright, Emily Gurley, Wayne Joubert, Daniel A. Jacobson
Data-Driven Whole-Genome Clustering to Detect Geospatial, Temporal, and Functional Trends in SARS-CoV-2 Evolution. PASC (2023)
Mikaela Cashman, Verónica G. Melesse Vergara, John H. Lagergren, Matthew Lane, Jean Merlet, Mikaela Atkinson, Jared Streich, Christopher E. Bradburne, Raina Plowright, Wayne Joubert, Daniel A. Jacobson
Longitudinal Effects on Plant Species Involved in Agriculture and Pandemic Emergence Undergoing Changes in Abiotic Stress. PASC (2023)
Scott Atchley, Christopher Zimmer, John Lange, David E. Bernholdt, Verónica G. Melesse Vergara, Thomas Beck, Michael J. Brim, Reuben D. Budiardja, Sunita Chandrasekaran, Markus Eisenbach, Thomas M. Evans, Matthew Ezell, Nicholas Frontiere, Antigoni Georgiadou, Joe Glenski, Philipp Grete, Steven P. Hamilton, John Holmen, Axel Huebl, Daniel A. Jacobson, Wayne Joubert, Kim Mcmahon, Elia Merzari, Stan G. Moore, Andrew Myers, Stephen Nichols, Sarp Oral, Thomas Papatheodore, Danny Perez, David M. Rogers, Evan Schneider, Jean-Luc Vay, P. K. Yeung
Frontier: Exploring Exascale. SC (2023)
Paul T. Bauman, Reuben D. Budiardja, Dmytro Bykov, Noel Chalmers, Jacqueline Chen, Nicholas Curtis, Marc Day, Markus Eisenbach, Lucas Esclapez, Alessandro Fanfarillo, William Freitag, Nicholas Frontiere, Antigoni Georgiadou, Joseph Glenski, Kalyana C. Gottiparthi, Marc T. Henry de Frahan, Gustav R. Jansen, Wayne Joubert, Justin G. Lietz, Jakub Kurzak, Nicholas Malaya, Bronson Messer, Damon McDougall, Paul Mullowney, Stephen Nichols, Matthew R. Norman, Thomas Papatheodore, Jon S. Rood, Philip C. Roth, Sarat Sreepathi, James B. White III, Noah Wolfe
Experiences Readying Applications for Exascale. CoRR (2023)
Nicholas Malaya, Bronson Messer, Joseph Glenski, Antigoni Georgiadou, Justin Lietz, Kalyana C. Gottiparthi, Marc Day, Jackie Chen, Jon S. Rood, Lucas Esclapez, James B. White III, Gustav R. Jansen, Nicholas Curtis, Stephen Nichols, Jakub Kurzak, Noel Chalmers, Chip Freitag, Paul T. Bauman, Alessandro Fanfarillo, Reuben D. Budiardja, Thomas Papatheodore, Nicholas Frontiere, Damon McDougall, Matthew R. Norman, Sarat Sreepathi, Philip C. Roth, Dmytro Bykov, Noah Wolfe, Paul Mullowney, Markus Eisenbach, Marc T. Henry de Frahan, Wayne Joubert
Experiences readying applications for Exascale. SC (2023)
Hao Lu, Michael A. Matheson, Vladyslav Oles, J. Austin Ellis, Wayne Joubert, Feiyi Wang
Climbing the Summit and Pushing the Frontier of Mixed Precision Benchmarks at Extreme Scale. SC (2022)
Wayne Joubert, Bronson Messer, Philip C. Roth, Antigoni Georgiadou, Justin Lietz, Markus Eisenbach, Junqi Yin
Learning to Scale the Summit: AI for Science on a Leadership Supercomputer. IPDPS Workshops (2022)
Verónica G. Vergara Larrea, Reuben D. Budiardja, Rahulkumar Gayatri, Christopher Daley, Oscar R. Hernandez, Wayne Joubert
Experiences in porting mini-applications to OpenACC and OpenMP on heterogeneous systems. Concurr. Comput. Pract. Exp. 32 (20) (2020)
Lixiang Luo, Tjerk P. Straatsma, Luis Enrique Aguilar-Suárez, Ria Broer, Dmytro Bykov, Eduardo F. D'Azevedo, Shirin S. Faraji, Kalyana C. Gottiparthi, Coen de Graaf, J. Austin Harris, Remco W. A. Havenith, Hans Jørgen Aagard Jensen, Wayne Joubert, R. K. Kathir, Jeff Larkin, Ying Wai Li, Dmitry I. Lyakh, O. E. Bronson Messer, Matthew R. Norman, Joseph C. Oefelein, Ramanan Sankaran, Andreas F. Tillack, Ashleigh L. Barnes, Lucas Visscher, Jack C. Wells, Meilani Wibowo
Pre-exascale accelerated application development: The ORNL Summit experience. IBM J. Res. Dev. 64 (3/4) (2020)
Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson
Parallel accelerated Custom Correlation Coefficient calculations for genomics applications. Parallel Comput. 84 (2019)
Verónica G. Vergara Larrea, Wayne Joubert, Michael J. Brim, Reuben D. Budiardja, Don Maxwell, Matthew Ezell, Christopher Zimmer, Swen Boehm, Wael R. Elwasif, Sarp Oral, Chris Fuson, Daniel Pelfrey, Oscar R. Hernandez, Dustin Leverman, Jesse Hanley, Mark A. Berrill, Arnold N. Tharrington
Scaling the Summit: Deploying the World's Fastest Supercomputer. ISC Workshops (2019)
Verónica G. Vergara Larrea, Michael J. Brim, Wayne Joubert, Swen Boehm, Matthew B. Baker, Oscar R. Hernandez, Sarp Oral, James Simmons, Don Maxwell
Are we witnessing the spectre of an HPC meltdown? Concurr. Comput. Pract. Exp. 31 (16) (2019)
Robert Searles, Sunita Chandrasekaran, Wayne Joubert, Oscar R. Hernandez
MPI + OpenACC: Accelerating radiation transport mini-application, minisweep, on heterogeneous systems. Comput. Phys. Commun. 236 (2019)
M. Graham Lopez, Wayne Joubert, Verónica G. Vergara Larrea, Oscar R. Hernandez, Azzam Haidar, Stanimire Tomov, Jack J. Dongarra
Evaluation of directive-based performance portable programming models. Int. J. High Perform. Comput. Netw. 14 (2) (2019)
David E. Womble, Mallikarjun Shankar, Wayne Joubert, J. Travis Johnston, Jack C. Wells, Jeffrey A. Nichols
Early experiences on Summit: Data analytics and AI applications. IBM J. Res. Dev. 63 (6) (2019)
Robert Searles, Sunita Chandrasekaran, Wayne Joubert, Oscar R. Hernandez
Abstractions and Directives for Adapting Wavefront Algorithms to Future Architectures. PASC (2018)
Wenlu Zhang, Wayne Joubert, Peng Wang, Bei Wang, William Tang, Matthew Niemerg, Lei Shi, Sam Taimourzadeh, Jian Bao, Zhihong Lin
Heterogeneous Programming and Optimization of Gyrokinetic Toroidal Code Using Directives. WACCPD@SC (2018)
Sudharshan S. Vazhkudai, Bronis R. de Supinski, Arthur S. Bland, Al Geist, James C. Sexton, Jim Kahle, Christopher Zimmer, Scott Atchley, Sarp Oral, Don E. Maxwell, Verónica G. Vergara Larrea, Adam Bertsch, Robin Goldstone, Wayne Joubert, Chris Chambreau, David Appelhans, Robert Blackmore, Ben Casses, George Chochia, Gene Davison, Matthew A. Ezell, Tom Gooding, Elsa Gonsiorowski, Leopold Grinberg, Bill Hanson, Bill Hartner, Ian Karlin, Matthew L. Leininger, Dustin Leverman, Chris Marroquin, Adam Moody, Martin Ohmacht, Ramesh Pankajakshan, Fernando Pizzano, James H. Rogers, Bryan S. Rosenburg, Drew Schmidt, Mallikarjun Shankar, Feiyi Wang, Py Watson, Bob Walkup, Lance D. Weems, Junqi Yin
The design, deployment, and evaluation of the CORAL pre-exascale systems. SC (2018)
Wayne Joubert, Deborah A. Weighill, David Kainer, Sharlee Climer, Amy Justice, Kjiersten Fagnan, Daniel A. Jacobson
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction. SC (2018)
Wayne Joubert, James Nance, Deborah A. Weighill, Daniel A. Jacobson
Parallel accelerated vector similarity calculations for genomics applications. Parallel Comput. 75 (2018)
O. E. Bronson Messer, Eduardo F. D'Azevedo, Judy Hill, Wayne Joubert, Mark A. Berrill, Christopher Zimmer
MiniApps derived from production HPC applications using multiple programing models. Int. J. High Perform. Comput. Appl. 32 (4) (2018)
Verónica G. Vergara Larrea, Wayne Joubert, Mark A. Berrill, Swen Boehm, Arnold N. Tharrington, Wael R. Elwasif, Don E. Maxwell
Experiences Evaluating Functionality and Performance of IBM POWER8+ Systems. ISC Workshops (2017)
Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson
Parallel Accelerated Custom Correlation Coefficient Calculations for Genomics Applications. CoRR (2017)
Wayne Joubert, James Nance, Deborah A. Weighill, Daniel A. Jacobson
Parallel Accelerated Vector Similarity Calculations for Genomics Applications. CoRR (2017)
Guido Juckeland, Oscar R. Hernandez, Arpith C. Jacob, Daniel Neilson, Verónica G. Vergara Larrea, Sandra Wienke, Alexander Bobyr, William C. Brantley, Sunita Chandrasekaran, Mathew E. Colgrove, Alexander Grund, Robert Henschel, Wayne Joubert, Matthias S. Müller, Dave Raddatz, Pavel Shelepugin, Brian Whitney, Bo Wang, Kalyan Kumaran
From Describing to Prescribing Parallelism: Translating the SPEC ACCEL OpenACC Suite to OpenMP Target Directives. ISC Workshops (2016)
M. Graham Lopez, Verónica G. Vergara Larrea, Wayne Joubert, Oscar R. Hernandez, Azzam Haidar, Stanimire Tomov, Jack J. Dongarra
Towards Achieving Performance Portability Using Directives for Accelerators. WACCPD@SC (2016)
Diego Rossinelli, Yu-Hang Tang, Kirill Lykov, Dmitry Alexeev, Massimo Bernaschi, Panagiotis E. Hadjidoukas, Mauro Bisson, Wayne Joubert, Christian Conti, George E. Karniadakis, Massimiliano Fatica, Igor Pivkin, Petros Koumoutsakos
The in-silico lab-on-a-chip: petascale and high-throughput simulations of microfluidics at cell resolution. SC (2015)
O. E. Bronson Messer, Eduardo F. D'Azevedo, Judith C. Hill, Wayne Joubert, S. Laosooksathit, Arnold N. Tharrington
Developing MiniApps on Modern Platforms Using Multiple Programming Models. CLUSTER (2015)
Wayne Joubert, Rick Archibald, Mark A. Berrill, W. Michael Brown, Markus Eisenbach, Ray W. Grout, Jeff Larkin, John M. Levesque, Bronson Messer, Matthew R. Norman, Bobby Philip, Ramanan Sankaran, Arnold N. Tharrington, John A. Turner
Accelerated application development: The ORNL Titan experience. Comput. Electr. Eng. 46 (2015)
Christos Kartsaklis, Wayne Joubert, Oscar R. Hernandez, Markus Eisenbach, Wael R. Elwasif, David E. Bernholdt
CUDA Grid-Level Task Progression Algorithms. HPCC/CSS/ICESS (2015)
Christos Kartsaklis, Oscar R. Hernandez, Chung-Hsing Hsu, Thomas Ilsche, Wayne Joubert, Richard L. Graham
HERCULES: A Pattern Driven Code Transformation System. IPDPS Workshops (2012)
Wayne Joubert, Shi-Quan Su
An analysis of computational workloads for the ORNL Jaguar system. ICS (2012)
Christopher Baker, Gregory G. Davidson, Thomas M. Evans, Steven P. Hamilton, Joshua J. Jarrell, Wayne Joubert
High performance radiation transport simulations: preparing for Titan. SC (2012)
Wayne Joubert
Results on Parallelization Strategies for ILU Preconditioners. PPSC (1999)
Alfred A. Lorber, Graham F. Carey, Wayne Joubert
ODE Recursions and Iterative Solvers for Linear Equations. SIAM J. Sci. Comput. 17 (1) (1996)
Vance Faber, Wayne Joubert, Emanuel Knill, Thomas A. Manteuffel
Minimal Residual Method Stronger than Polynomial Preconditioning. SIAM J. Matrix Anal. Appl. 17 (4) (1996)
Wayne Joubert, Graham F. Carey
Embedded Gradient Iterative Solution of a Class of Nonlinear Pde's on the Connection Machine. Int. J. High Speed Comput. 6 (2) (1994)
Wayne Joubert, Thomas Oppe
Improved SSOR and incomplete Cholesky solution of linear equations on shared memory and distributed memory parallel computers. Numer. Linear Algebra Appl. 1 (3) (1994)
Wayne Joubert
A Robust GMRES-Based Adaptive Polynomial Preconditioning Algorithm for Nonsymmetric Linear Systems. SIAM J. Sci. Comput. 15 (2) (1994)
Wayne Joubert
On the convergence behavior of the restarted GMRES algorithm for solving nonsymmetric linear systems. Numer. Linear Algebra Appl. 1 (5) (1994)
Wayne Joubert, Graham F. Carey
PCG: A Software Package for the Iterative Solution of Linear Systems on Scalar, Vector and Parallel Computers. PPSC (1993)
Wayne Joubert
Lanczos Methods for the Solution of Nonsymmetric Systems of Linear Equations. SIAM J. Matrix Anal. Appl. 13 (3) (1992)
Wayne Joubert, Thomas A. Manteuffel, Seymour V. Parter, Sze-Ping Wong
Preconditioning Second-Order Elliptic Operators: Experiment and Theory. SIAM J. Sci. Comput. 13 (1) (1992)
Wayne Joubert, Graham F. Carey
Parallelizable Restarted Iterative Methods for Nonsymmetric Linear Systems. PPSC (1991)
Wayne Joubert, Peter Highnam, Graham F. Carey
PCG/CM: A Package for the Iterative Solution of Large Sparse Linear Systems ond the Connection Machine. PPSC (1991)