Danny Perez

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 15

Top Topics

Visual Analytics

Optimization Strategies

Molecular Dynamics

Relative Humidity

Top Venues

SIAM J. Appl. Dyn. Syst.

Publications

Rostyslav Hnatyshyn, Jieqiong Zhao, Danny Perez, James P. Ahrens, Ross Maciejewski
MolSieve: A Progressive Visual Analytics System for Molecular Dynamics Simulations. IEEE Trans. Vis. Comput. Graph. 30 (1) (2024)
Thomas D. Swinburne, Danny Perez
Misspecification uncertainties in near-deterministic regression. CoRR (2024)
Kylee Santos, Stan G. Moore, Tomas Oppelstrup, Amirali Sharifian, Ilya Sharapov, Aidan P. Thompson, Delyan Z. Kalchev, Danny Perez, Robert Schreiber, Scott Pakin, Edgar A Leon, James H. Laros III, Michael James, Sivasankaran Rajamanickam
Breaking the Molecular Dynamics Timescale Barrier Using a Wafer-Scale System. CoRR (2024)
Scott Atchley, Christopher Zimmer, John Lange, David E. Bernholdt, Verónica G. Melesse Vergara, Thomas Beck, Michael J. Brim, Reuben D. Budiardja, Sunita Chandrasekaran, Markus Eisenbach, Thomas M. Evans, Matthew Ezell, Nicholas Frontiere, Antigoni Georgiadou, Joe Glenski, Philipp Grete, Steven P. Hamilton, John Holmen, Axel Huebl, Daniel A. Jacobson, Wayne Joubert, Kim Mcmahon, Elia Merzari, Stan G. Moore, Andrew Myers, Stephen Nichols, Sarp Oral, Thomas Papatheodore, Danny Perez, David M. Rogers, Evan Schneider, Jean-Luc Vay, P. K. Yeung
Frontier: Exploring Exascale. SC (2023)
Rostyslav Hnatyshyn, Jieqiong Zhao, Danny Perez, James P. Ahrens, Ross Maciejewski
MolSieve: A Progressive Visual Analytics System for Molecular Dynamics Simulations. CoRR (2023)
Yen Ting Lin, Yifeng Tian, Danny Perez, Daniel Livescu
Regression-Based Projection for Learning Mori-Zwanzig Operators. SIAM J. Appl. Dyn. Syst. 22 (4) (2023)
Kai Zhao, Sheng Di, Danny Perez, Xin Liang, Zizhong Chen, Franck Cappello
MDZ: An Efficient Error-bounded Lossy Compressor for Molecular Dynamics. ICDE (2022)
Olga Gorynina, Frédéric Legoll, Tony Lelièvre, Danny Perez
Combining machine-learned and empirical force fields with the parareal algorithm: application to the diffusion of atomistic defects. CoRR (2022)
Andrew Garmon, Vinay Ramakrishnaiah, Danny Perez
Resource allocation for task-level speculative scientific applications: A proof of concept using Parallel Trajectory Splicing. Parallel Comput. 112 (2022)
Michael Tynes, Wenhao Gao, Daniel J. Burrill, Enrique R. Batista, Danny Perez, Ping Yang, Nicholas Lubbers
Pairwise Difference Regression: A Machine Learning Meta-algorithm for Improved Prediction and Uncertainty Quantification in Chemical Search. J. Chem. Inf. Model. 61 (8) (2021)
Rahulkumar Gayatri, Stan G. Moore, Evan Weinberg, Nicholas Lubbers, Sarah Anderson, Jack Deslippe, Danny Perez, Aidan P. Thompson
Rapid Exploration of Optimization Strategies on Advanced Architectures using TestSNAP and LAMMPS. CoRR (2020)
Nasir U. Eisty, Danny Perez, Jeffrey C. Carver, J. David Moulton, Hai Ah Nam
Testing Research Software: A Case Study. ICCS (7) (2020)
Andrew Garmon, Vinay Ramakrishnaiah, Danny Perez
Resource allocation for task-level speculative scientific applications: a proof of concept using Parallel Trajectory Splicing. CoRR (2020)
Michael A. Sevilla, Carlos Maltzahn, Peter Alvaro, Reza Nasirigerdeh, Bradley W. Settlemyer, Danny Perez, David Rich, Galen M. Shipman
Programmable Caches with a Data Management Language and Policy Engine. CCGrid (2018)
Richard J. Zamora, Arthur F. Voter, Danny Perez, Nandakishore Santhi, Susan M. Mniszewski, Sunil Thulasidasan, Stephan J. Eidenbenz
Discrete event performance prediction of speculatively parallel temperature-accelerated dynamics. Simul. 92 (12) (2016)
Andrew Binder, Mitchell Luskin, Danny Perez, Arthur F. Voter
Analysis of Transition State Theory Rates upon Spatial Coarse-Graining. Multiscale Model. Simul. 13 (3) (2015)
Susan M. Mniszewski, Christoph Junghans, Arthur F. Voter, Danny Perez, Stephan J. Eidenbenz
TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics. ACM Trans. Model. Comput. Simul. 25 (3) (2015)
Claude Le Bris, Tony Lelièvre, Mitchell Luskin, Danny Perez
A mathematical formalization of the parallel replica dynamics. Monte Carlo Methods Appl. 18 (2) (2012)