Tomas Oppelstrup

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 11

Top Topics

Similarity Metric

Stochastic Approximation

Massively Parallel

Top Venues

Mach. Learn. Sci. Technol.

Publications

Kylee Santos, Stan G. Moore, Tomas Oppelstrup, Amirali Sharifian, Ilya Sharapov, Aidan P. Thompson, Delyan Z. Kalchev, Danny Perez, Robert Schreiber, Scott Pakin, Edgar A Leon, James H. Laros III, Michael James, Sivasankaran Rajamanickam
Breaking the Molecular Dynamics Timescale Barrier Using a Wafer-Scale System. CoRR (2024)
Harsh Bhatia, Jayaraman J. Thiagarajan, Rushil Anirudh, T. S. Jayram, Tomas Oppelstrup, Helgi I. Ingólfsson, Felice C. Lightstone, Peer-Timo Bremer
A biology-informed similarity metric for simulated patches of human cell membrane. Mach. Learn. Sci. Technol. 3 (3) (2022)
Harsh Bhatia, Francesco Di Natale, Joseph Y. Moon, Xiaohua Zhang, Joseph R. Chavez, Fikret Aydin, Chris Stanley, Tomas Oppelstrup, Chris Neale, Sara Kokkila Schumacher, Dong H. Ahn, Stephen Herbein, Timothy S. Carpenter, Sandrasegaram Gnanakaran, Peer-Timo Bremer, James N. Glosli, Felice C. Lightstone, Helgi I. Ingólfsson
Generalizable coordination of large multiscale workflows: challenges and learnings at scale. SC (2021)
Harsh Bhatia, Timothy S. Carpenter, Helgi I. Ingólfsson, Gautham Dharuman, Piyush Karande, Shusen Liu, Tomas Oppelstrup, Chris Neale, Felice C. Lightstone, Brian Van Essen, James N. Glosli, Peer-Timo Bremer
Machine-learning-based dynamic-importance sampling for adaptive multiscale simulations. Nat. Mach. Intell. 3 (5) (2021)
Francesco Di Natale, Harsh Bhatia, Timothy S. Carpenter, Chris Neale, Sara Kokkila Schumacher, Tomas Oppelstrup, Liam Stanton, Xiaohua Zhang, Shiv Sundram, Thomas R. W. Scogland, Gautham Dharuman, Michael P. Surh, Yue Yang, Claudia Misale, Lars Schneidenbach, Carlos Costa, Changhoan Kim, Bruce D'Amora, Sandrasegaram Gnanakaran, Dwight V. Nissley, Frederick H. Streitz, Felice C. Lightstone, Peer-Timo Bremer, James N. Glosli, Helgi I. Ingólfsson
A massively parallel infrastructure for adaptive multiscale simulations: modeling RAS initiation pathway for cancer. SC (2019)
Markus Schordan, Tomas Oppelstrup, David R. Jefferson, Peter D. Barnes Jr.
Generation of Reversible C++ Code for Optimistic Parallel Discrete Event Simulation. New Gener. Comput. 36 (3) (2018)
Jae-Seung Yeom, Tanya Kostova-Vassilevska, Peter D. Barnes Jr., David R. Jefferson, Tomas Oppelstrup
Exploratory Modeling and Simulation of the Evolutionary Dynamics of Single-Stranded RNA Virus Populations. IPDPS Workshops (2017)
Markus Schordan, Tomas Oppelstrup, David R. Jefferson, Peter D. Barnes Jr., Daniel J. Quinlan
Automatic Generation of Reversible C++ Code and Its Performance in a Scalable Kinetic Monte-Carlo Application. SIGSIM-PADS (2016)
Tomas Oppelstrup, David R. Jefferson, Vasily V. Bulatov, Luis A. Zepeda-Ruiz
SPOCK: Exact Parallel Kinetic Monte-Carlo on 1.5 Million Tasks. SIGSIM-PADS (2016)
Markus Schordan, David R. Jefferson, Peter D. Barnes Jr., Tomas Oppelstrup, Daniel J. Quinlan
Reverse Code Generation for Parallel Discrete Event Simulation. RC (2015)
Amanda Randles, Erik W. Draeger, Tomas Oppelstrup, Liam Krauss, John A. Gunnels
Massively parallel models of the human circulatory system. SC (2015)
Tomas Oppelstrup
Matrix compression by common subexpression elimination. J. Comput. Phys. 247 (2013)
Brian Carnes, Bor Chan, Erik W. Draeger, Jean-Luc Fattebert, Larry Fried, James N. Glosli, William D. Krauss, Steve H. Langer, Rose McCallen, Arthur A. Mirin, Fady Najjar, Albert L. Nichols, Tomas Oppelstrup, James A. Rathkopf, David F. Richards, Frederick H. Streitz, Pavlos Vranas, John Jeremy Rice, John A. Gunnels, Viatcheslav Gurev, Changhoan Kim, John Magerlein, Matthias Reumann, Hui-Fang Wen
Science at LLNL with IBM Blue Gene/Q. IBM J. Res. Dev. 57 (1/2) (2013)
Arthur A. Mirin, David F. Richards, James N. Glosli, Erik W. Draeger, Bor Chan, Jean-Luc Fattebert, William D. Krauss, Tomas Oppelstrup, John Jeremy Rice, John A. Gunnels, Viatcheslav Gurev, Changhoan Kim, John Magerlein, Matthias Reumann, Hui-Fang Wen
Toward real-time modeling of human heart ventricles at cellular resolution: simulation of drug-induced arrhythmias. SC (2012)
Tomas Oppelstrup, Alexander Stukowski, Jaime Marian
Poster: a highly efficient MGPT implementation for LAMMPS; with strong scaling. SC Companion (2011)
Aleksandar Donev, Vasily V. Bulatov, Tomas Oppelstrup, George H. Gilmer, Babak Sadigh, Malvin H. Kalos
A First-Passage Kinetic Monte Carlo algorithm for complex diffusion-reaction systems. J. Comput. Phys. 229 (9) (2010)