Vipin Sachdeva

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 14

Top Topics

Clustering Algorithm

Fully Integrated

Software As A Service

Top Venues

IPDPS Workshops

Publications

Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL (2022)
Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC (2021)
Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM (2021)
Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM (2021)
Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR (2020)
Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt
Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC (2020)
Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC (2020)
Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
Fully integrated FPGA molecular dynamics simulations. SC (2019)
Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP (2019)
Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR (2019)
Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva, Martin C. Herbordt
OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC (2017)
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. BMC Bioinform. 18 (1) (2017)
Yu-Hang Tang, Lu Lu, He Li, Constantinos Evangelinos, Leopold Grinberg, Vipin Sachdeva, George E. Karniadakis
OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution. CoRR (2017)
Vipin Sachdeva, Srinivas Aluru, David A. Bader
A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. IPDPS Workshops (2016)
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
K-mer clustering algorithm using a MapReduce approach. BIBM (2014)
Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar
Exploring HPC-based scientific software as a service using CometCloud. CollaborateCom (2014)
Vipin Sachdeva, Chang Sik Kim, Kirk E. Jordan, Martyn D. Winn
Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. IPDPS Workshops (2014)
Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein
Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. IBM J. Res. Dev. 57 (1/2) (2013)
Timothy J. Tautges, Jason Kraftcheck, Nathan Bertram, Vipin Sachdeva, John Magerlein
Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation. IPDPS Workshops (2012)
Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein
Coupling a Basin Modeling and a Seismic Code using MOAB. ICCS (2012)
Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James C. Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler
Enabling High-Performance Computing as a Service. Computer 45 (10) (2012)
Vipin Sachdeva
p_2Matlab: Productive Parallel Matlab for the Exascale. IPDPS Workshops (2011)
Vipin Sachdeva, Michael Kistler, David A. Bader
Evaluating Cell/B.E software cache for ClustalW. ISCAS (2010)
Vipin Sachdeva, Douglas M. Freimuth, Chris Mueller
Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures. ICCS (1) (2009)
Vipin Sachdeva, Michael Kistler, Evan Speight, Tzy-Hwa Kathy Tzeng
Exploring the viability of the Cell Broadband Engine for bioinformatics applications. Parallel Comput. 34 (11) (2008)
Vipin Sachdeva, Michael Kistler, William Evan Speight, Tzy-Hwa Kathy Tzeng
Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications. IPDPS (2007)
Vipin Sachdeva, Evan Speight, Mark W. Stephenson, Lei Chen
Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture. IISWC (2007)
Vipin Sachdeva, Michael Kistler, Evan Speight
Poster reception - Pairwise alignments on the cell processor. SC (2006)
David A. Bader, Vipin Sachdeva
A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. PDCS (2005)
David A. Bader, Vipin Sachdeva
Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops (2005)