Kirk E. Jordan

Publication Activity (10 Years)

Years Active: 1987-2022
Publications (10 Years): 11

Top Topics

Clustering Algorithm

High Performance Computing

Computational Science

Virtual Screening

Top Venues

IPDPS Workshops

J. Chem. Inf. Model.

Publications

David E. Graff, Matteo Aldeghi, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley
Self-focusing virtual screening with active design space pruning. CoRR (2022)
David E. Graff, Matteo Aldeghi, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley
Self-Focusing Virtual Screening with Active Design Space Pruning. J. Chem. Inf. Model. 62 (16) (2022)
Matteo Aldeghi, David E. Graff, Nathan C. Frey, Joseph A. Morrone, Edward O. Pyzer-Knapp, Kirk E. Jordan, Connor W. Coley
Roughness of Molecular Property Landscapes and Its Impact on Modellability. J. Chem. Inf. Model. 62 (19) (2022)
Jony Castangna, Fausto Martelli, Kirk E. Jordan, Jason Crain
Simulation of large molecular systems with electronically-derived forces. Comput. Phys. Commun. 264 (2021)
Kirk E. Jordan, Ji Li, Thomas J. Peters
Knot Morphing Algorithm for Quantum 'Fragile Topology'. CoRR (2020)
Debanjan Datta, David Appelhans, Constantinos Evangelinos, Kirk E. Jordan
An Asynchronous Two-Level Checkpointing Method to Solve Adjoint Problems on Hierarchical Memory Spaces. Comput. Sci. Eng. 20 (4) (2018)
Malgorzata J. Zimon, Vadim V. Elisseev, Robert Sawko, Samuel Antão, Kirk E. Jordan
Uncertainty quantification-as-a-service. CASCON (2018)
Milos Puzovic, Vadim V. Elisseev, Kirk E. Jordan, James L. McDonagh, Alexander Harrison, Robert Sawko
Improving Performance and Energy Efficiency on OpenPower Systems Using Scalable Hardware-Software Co-design. ISC Workshops (2018)
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. BMC Bioinform. 18 (1) (2017)
Ulrich Rüde, Karen Willcox, Lois Curfman McInnes, Hans De Sterck, George Biros, Hans-Joachim Bungartz, James Corones, Evin Cramer, James Crowley, Omar Ghattas, Max D. Gunzburger, Michael Hanke, Robert J. Harrison, Michael A. Heroux, Jan S. Hesthaven, Peter K. Jimack, Chris Johnson, Kirk E. Jordan, David E. Keyes, Rolf H. Krause, Vipin Kumar, Stefan Mayer, Juan Meza, Knut Martin Mørken, J. Tinsley Oden, Linda R. Petzold, Padma Raghavan, Suzanne M. Shontz, Anne E. Trefethen, Peter R. Turner, Vladimir V. Voevodin, Barbara I. Wohlmuth, Carol S. Woodward
Research and Education in Computational Science and Engineering. CoRR (2016)
Ed Bennett, Biagio Lucini, Luigi Del Debbio, Kirk E. Jordan, Agostino Patella, Claudio Pica, Antonio Rago
BSMBench: A flexible and scalable HPC benchmark from beyond the standard model physics. HPCS (2016)
Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
K-mer clustering algorithm using a MapReduce approach. BIBM (2014)
Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang
Algebraic Multigrid on a Dragonfly Network: First Experiences on a Cray XC30. PMBS@SC (2014)
Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar
Exploring HPC-based scientific software as a service using CometCloud. CollaborateCom (2014)
Ed Bennett, Luigi Del Debbio, Kirk E. Jordan, Biagio Lucini, Agostino Patella, Claudio Pica, Antonio Rago
BSMBench: a flexible and scalable supercomputer benchmark from computational particle physics. CoRR (2014)
Ji Li, Thomas J. Peters, Kirk E. Jordan
Computational Topology for Approximations of Knots. CoRR (2014)
Vipin Sachdeva, Chang Sik Kim, Kirk E. Jordan, Martyn D. Winn
Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. IPDPS Workshops (2014)
Kirk E. Jordan, Ji Li, Thomas J. Peters, John A. Roulier
Isotopic equivalence by Bézier curve subdivision for application to high performance computing. Comput. Aided Geom. Des. 31 (9) (2014)
David E. Keyes, Lois C. McInnes, Carol S. Woodward, William Gropp, Eric Myra, Michael Pernice, John Bell, Jed Brown, Alain Clo, Jeffrey M. Connors, Emil M. Constantinescu, Donald J. Estep, Kate Evans, Charbel Farhat, Ammar Hakim, Glenn Hammond, Glen Hansen, Judith Hill, Tobin Isaac, Xiangmin Jiao, Kirk E. Jordan, Dinesh K. Kaushik, Efthimios Kaxiras, Alice E. Koniges, Kihwan Lee, Aaron Lott, Qiming Lu, John Magerlein, Reed Maxwell, Michael McCourt, Miriam Mehl, Roger P. Pawlowski, Amanda Peters Randles, Daniel R. Reynolds, Béatrice Rivière, Ulrich Rüde, Timothy D. Scheibe, John N. Shadid, Brendan Sheehan, Mark S. Shephard, Andrew R. Siegel, Barry Smith, Xianzhu Tang, Cian Wilson, Barbara I. Wohlmuth
Multiphysics simulations: Challenges and opportunities. Int. J. High Perform. Comput. Appl. 27 (1) (2013)
Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang
Systematic Reduction of Data Movement in Algebraic Multigrid Solvers. IPDPS Workshops (2013)
Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein
Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. IBM J. Res. Dev. 57 (1/2) (2013)
Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein
Coupling a Basin Modeling and a Seismic Code using MOAB. ICCS (2012)
Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang
Performance Modeling of Algebraic Multigrid on Blue Gene/Q: Lessons Learned. SC Companion (2012)
Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James C. Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler
Enabling High-Performance Computing as a Service. Computer 45 (10) (2012)
Hormozd Gahvari, William Gropp, Kirk E. Jordan, Martin Schulz, Ulrike Meier Yang
Modeling the Performance of an Algebraic Multigrid Cycle Using Hybrid MPI/OpenMP. ICPP (2012)
Hugh P. Cassidy, Thomas J. Peters, Kirk E. Jordan
Dynamic Computational Topology for Piecewise Linear Curves. CCCG (2012)
Hormozd Gahvari, Allison H. Baker, Martin Schulz, Ulrike Meier Yang, Kirk E. Jordan, William Gropp
Modeling the performance of an algebraic multigrid cycle on HPC platforms. ICS (2011)
Peter R. Turner, Linda R. Petzold, Angela B. Shiflet, Ignatios Vakalis, Kirk E. Jordan, Samuel St. John
Undergraduate Computational Science and Engineering Education. SIAM Rev. 53 (3) (2011)
Ray Tuminaro, Michele Benzi, Xiao-Chuan Cai, Iain Duff, Howard C. Elman, Roland Freund, Kirk E. Jordan, Tim Kelley, David E. Keyes, Misha Elena Kilmer, Sven Leyffer, Tom Manteuffel, Steve F. McCormick, David J. Silvester, Homer F. Walker
Special Section: 2010 Copper Mountain Conference. SIAM J. Sci. Comput. 33 (5) (2011)
Tran Vu Pham, Hani Jamjoom, Kirk E. Jordan, Zon-Yin Shae
A service composition framework for market-oriented high performance computing cloud. HPDC (2010)
Kirk E. Jordan, Lance Edward Miller, Edward L. F. Moore, Thomas J. Peters, Alexander Russell
Modeling time and topology for animation and visualization with examples on parametric geometry. Theor. Comput. Sci. 405 (1-2) (2008)
William D. Gropp, Wolfgang Frings, Marc-André Hermanns, Ed Jedlicka, Kirk E. Jordan, Fred Mintzer, Boris Orth
Scaling Science Applications on Blue Gene. PARCO (2007)
Steve Burbeck, Kirk E. Jordan
Preface. IBM J. Res. Dev. 50 (6) (2006)
Steve Burbeck, Kirk E. Jordan
An assessment of the role of computing in systems biology. IBM J. Res. Dev. 50 (6) (2006)
George I. Fann, Gregory Beylkin, Robert J. Harrison, Kirk E. Jordan
Singular operators in multiwavelet bases. IBM J. Res. Dev. 48 (2) (2004)
Kirk E. Jordan
Preface. IBM J. Res. Dev. 48 (2) (2004)
Robert Haimes, Kirk E. Jordan
Using PVM and MPI for Co-processed, Distributed and Parallel Scientific Visualization. IPPS/SPDP Workshops (1998)
Kirk E. Jordan, David A. Yuen, David M. Reuteler, Shuxia Zhang
Distributed visualization of 3D thermal convection in the geological sciences. Parallel CFD (1996)
Adam Greenberg, Marcelo Rame, Kirk E. Jordan, Mary F. Wheeler
UTCHEM: A Chemical Flood Simulator on the CM5. PPSC (1993)
Andrei V. Malevsky, David A. Yuen, Kirk E. Jordan
Simulation of Particle Mixing by Turbulent Convective Flows on the Connection Machine. SC (1992)
Kirk E. Jordan
The Good, The Bad, and The Ugly: Comparing High Speed Computer Systems. COMPCON (1988)
Kirk E. Jordan
Performance Comparison of Large-Scale Scientific Computers: Scalar Mainframes, Mainframes with Integrated Vector Facilities, and Supercomputers. Computer 20 (3) (1987)