Teresa Head-Gordon

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 6

Top Topics

Protein Structure Prediction

Subcellular Localization

Confidence Level

Top Venues

J. Comput. Phys.

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Zi Hao Liu, João M. C. Teixeira, Oufan Zhang, Thomas E. Tsangaris, Jie Li, Claudiu C. Gradinaru, Teresa Head-Gordon, Julie D. Forman-Kay
Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments. Bioinform. 39 (12) (2023)
Xingyi Guan, Joseph P. Heindel, Taehee Ko, Chao Yang, Teresa Head-Gordon
Using machine learning to go beyond potential energy surface benchmarking for chemical reactivity. Nat. Comput. Sci. 3 (11) (2023)
Zi Hao Liu, Oufan Zhang, João M. C. Teixeira, Jie Li, Teresa Head-Gordon, Julie D. Forman-Kay
SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures. J. Open Source Softw. 8 (86) (2023)
Dong An, Sara Y. Cheng, Teresa Head-Gordon, Lin Lin, Jianfeng Lu
Convergence of stochastic-extended Lagrangian molecular dynamics method for polarizable force field simulation. J. Comput. Phys. 438 (2021)
Xingyi Guan, Itai Leven, Farnaz Heidar-Zadeh, Teresa Head-Gordon
Protein C-GeM: A Coarse-Grained Electron Model for Fast and Accurate Protein Electrostatics Prediction. J. Chem. Inf. Model. 61 (9) (2021)
Lisa E. Felberg, David H. Brookes, Eng-Hui Yap, Elizabeth Jurrus, Nathan A. Baker, Teresa Head-Gordon
PB-AM: An open-source, fully analytical linear poisson-boltzmann solver. J. Comput. Chem. 38 (15) (2017)
Matthew S. Lin, Teresa Head-Gordon
Reliable protein structure refinement using a physical energy function. J. Comput. Chem. 32 (4) (2011)
Cheng Peng, Teresa Head-Gordon
The Dynamical Mechanism of Auto-Inhibition of AMP-Activated Protein Kinase. PLoS Comput. Biol. 7 (7) (2011)
Jonathan E. Kohn, Pavel V. Afonine, Jory Z. Ruscio, Paul D. Adams, Teresa Head-Gordon
Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles. PLoS Comput. Biol. 6 (8) (2010)
Jory Z. Ruscio, Nicolas L. Fawzi, Teresa Head-Gordon
How hot? Systematic convergence of the replica exchange method using multiple reservoirs. J. Comput. Chem. 31 (3) (2010)
Elizabeth Eskow, Brett W. Bader, Richard H. Byrd, Silvia N. Crivelli, Teresa Head-Gordon, Vincent Lamberti, Robert B. Schnabel
An optimization approach to the problem of protein structure prediction. Math. Program. 101 (3) (2004)
Silvia N. Crivelli, Teresa Head-Gordon
A new load-balancing strategy for the solution of dynamical large-tree-search problems using a hierarchical approach. IBM J. Res. Dev. 48 (2) (2004)
Scott Brown, Teresa Head-Gordon
Cool walking: A new Markov chain Monte Carlo sampling method. J. Comput. Chem. 24 (1) (2003)
Jon M. Sorenson, Teresa Head-Gordon
Protein Engineering Study of Protein L by Simulation. J. Comput. Biol. 9 (1) (2002)
Teresa Head-Gordon, John C. Wooley
Computational challenges in structural and functional genomics. IBM Syst. J. 40 (2) (2001)
Jon M. Sorenson, Teresa Head-Gordon
Matching Simulation and Experiment: A New Simplified Model for Simulating Protein Folding. J. Comput. Biol. 7 (3-4) (2000)
Jon M. Sorenson, Teresa Head-Gordon
Matching simulation and experiment (extended abstract): a new simplified model for simulating protein folding. RECOMB (2000)
Silvia N. Crivelli, Richard H. Byrd, Elizabeth Eskow, Robert B. Schnabel, Richard Yu, Thomas M. Philip, Teresa Head-Gordon
A Global Optimization Strategy for Predicting -helical Protein Tertiary Structure. Comput. Chem. 24 (3-4) (2000)
Silvia N. Crivelli, Teresa Head-Gordon, Richard H. Byrd, Elizabeth Eskow, Robert B. Schnabel
A Hierarchical Approach for Parallelization of a Global Optimization Method for Protein Structure Prediction. Euro-Par (1999)