Sumanta Ray

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 19

Top Topics

Protein Interaction

Integrating Multiple

Negative Matrix Factorization

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Lutfunnesa Khatun, Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
An Autoencoder-based Deep Learning Approach for Classifying Colon and Rectum Adenocarcinoma. ICCCNT (2023)
Syed Alberuni, Sumanta Ray
Predicting Disease-Associated Genes Through Interaction and Ontology-Based Inference Technique. CICBA (2) (2023)
Sumanta Ray, Snehalika Lall, Sanghamitra Bandyopadhyay
A Deep Integrated Framework for Predicting SARS-CoV2-Human Protein-Protein Interaction. IEEE Trans. Emerg. Top. Comput. Intell. 6 (6) (2022)
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay
A copula based topology preserving graph convolution network for clustering of single-cell RNA-seq data. PLoS Comput. Biol. 18 (3) (2022)
Sumanta Ray, Snehalika Lall, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Alexander Schönhuth
Deep variational graph autoencoders for novel host-directed therapy options against COVID-19. Artif. Intell. Medicine 134 (2022)
Snehalika Lall, Abhik Ghosh, Sumanta Ray, Sanghamitra Bandyopadhyay
sc-REnF: An entropy guided robust feature selection for single-cell RNA-seq data. Briefings Bioinform. 23 (2) (2022)
Sumanta Ray, Meghana Desai, Saumyadipta Pyne
Systematic mining of patterns of polysubstance use in a nationwide population survey. Comput. Biol. Medicine 151 (Part) (2022)
Snehalika Lall, Sumanta Ray, Sanghamitra Bandyopadhyay
RgCop-A regularized copula based method for gene selection in single-cell RNA-seq data. PLoS Comput. Biol. 17 (10) (2021)
Sourav Biswas, Sumanta Ray, Sanghamitra Bandyopadhyay
Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host Pathogen Interaction Network. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Seikh Mazharul Islam, Sk Md Mosaddek Hossain, Sumanta Ray
DTI-SNNFRA: Drug-Target interaction prediction by shared nearest neighbors and fuzzy-rough approximation. CoRR (2020)
Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
Identification of Hub Genes and Key Modules in Stomach Adenocarcinoma Using nsNMF-Based Data Integration Technique. ICIT (2019)
Sumanta Ray, Ujjwal Maulik
Discovering Perturbation of Modular Structure in HIV Progression by Integrating Multiple Data Sources Through Non-Negative Matrix Factorization. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (3) (2018)
Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
Preservation affinity in consensus modules among stages of HIV-1 progression. BMC Bioinform. 18 (1) (2017)
Saif Ayan Khan, Sumanta Ray
Integrating Multi-view Data: A Hypergraph Based Approach. CICBA (2) (2017)
Sumanta Ray, Sk Md Mosaddek Hossain, Lutfunnesa Khatun, Anirban Mukhopadhyay
A comprehensive analysis on preservation patterns of gene co-expression networks during Alzheimer's disease progression. BMC Bioinform. 18 (1) (2017)
Debjani Bhattacharjee, Sk Md Mosaddek Hossain, Raziya Sultana, Sumanta Ray
Topological Inquisition into the PPI Networks Associated with Human Diseases Through Graphlet Frequency Distribution. PReMI (2017)
Sumanta Ray, Sk Md Mosaddek Hossain, Lutfunnesa Khatun
Discovering preservation pattern from co-expression modules in progression of HIV-1 disease: An eigengene based approach. ICACCI (2016)
Sumanta Ray, Sanghamitra Bandyopadhyay
Discovering Condition Specific Topological Pattern Changes in Coexpression Network: An Application to HIV-1 Progression. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (6) (2016)
Sumanta Ray, Sanghamitra Bandyopadhyay
A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs. BMC Bioinform. 17 (2016)
Sanghamitra Bandyopadhyay, Sumanta Ray, Anirban Mukhopadhyay, Ujjwal Maulik
approaches for analysis and prediction of HIV-1-human protein-protein interactions. Briefings Bioinform. 16 (5) (2015)
Sumanta Ray, Sinchani Chakraborty, Anirban Mukhopadhyay
DCoSpect: A Novel Differentially Coexpressed Gene Module Detection Algorithm Using Spectral Clustering. FICTA (2015)
Sanghamitra Bandyopadhyay, Sumanta Ray, Anirban Mukhopadhyay, Ujjwal Maulik
A multiobjective approach for identifying protein complexes and studying their association in multiple disorders. Algorithms Mol. Biol. 10 (2015)
Anirban Mukhopadhyay, Sumanta Ray, Ujjwal Maulik
Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach. BMC Bioinform. 15 (2014)
Sumanta Ray, Sanghamitra Bandyopadhyay, Anirban Mukhopadhyay, Ujjwal Maulik
Incorporating fuzzy semantic similarity measure in detecting human protein complexes in PPI network: A multiobjective approach. FUZZ-IEEE (2013)