Anirban Mukhopadhyay

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 39

Top Topics

Multiobjective Evolutionary Algorithms

Protein Interaction

Facility Location

Gene Expression

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Arup Kumar Bhattacharjee, Anirban Mukhopadhyay
An improved genetic algorithm with local refinement for solving hierarchical single-allocation hub median facility location problem. Soft Comput. 27 (3) (2023)
Lutfunnesa Khatun, Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
An Autoencoder-based Deep Learning Approach for Classifying Colon and Rectum Adenocarcinoma. ICCCNT (2023)
Paramita Biswas, Anirban Mukhopadhyay
A Multi-objective Evolutionary Framework for Identifying Dengue Stage-Specific Differentially Co-expressed and Functionally Enriched Gene Modules. EMO (2023)
Subhankar Roy, Anirban Mukhopadhyay
A Comparative Study on the Evaluation of k-mer Indexing in Genome Sequence Compression. CICBA (1) (2023)
Lopamudra Dey, Anirban Mukhopadhyay
Compact Genetic Algorithm-Based Feature Selection for Sequence-Based Prediction of Dengue-Human Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
Solving a new variant of the capacitated maximal covering location problem with fuzzy coverage area using metaheuristic approaches. Comput. Ind. Eng. 170 (2022)
Sumanta Ray, Snehalika Lall, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Alexander Schönhuth
Deep variational graph autoencoders for novel host-directed therapy options against COVID-19. Artif. Intell. Medicine 134 (2022)
Anirban Mukhopadhyay, L. Darrell Whitley, Renato Tinós
An efficient implementation of iterative partial transcription for the traveling salesman problem. GECCO (2021)
Lopamudra Dey, Anirban Mukhopadhyay
Gene Expression-Based Prediction of Lung Cancer-Associated Protein-Protein Interactions. CICBA (2021)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
A multi-objective formulation of maximal covering location problem with customers' preferences: Exploring Pareto optimality-based solutions. Expert Syst. Appl. 186 (2021)
Srimanta Kundu, Ujjwal Maulik, Anirban Mukhopadhyay
A game theory-based approach to fuzzy clustering for pixel classification in remote sensing imagery. Soft Comput. 25 (7) (2021)
Sudip Poddar, Anirban Mukhopadhyay
EXCLUVIS: A MATLAB GUI Software for Comparative Study of Clustering and Visualization of Gene Expression Data. CoRR (2020)
Paramita Biswas, Anirban Mukhopadhyay
Identifying cancer-associated modules from microRNA co-expression networks: a multiobjective evolutionary approach. Soft Comput. 24 (22) (2020)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
A Review of Judgment Analysis Algorithms for Crowdsourced Opinions. IEEE Trans. Knowl. Data Eng. 32 (7) (2020)
Lopamudra Dey, Anirban Mukhopadhyay
A Graph-Based Approach for Finding the Dengue Infection Pathways in Humans Using Protein-Protein Interactions. J. Comput. Biol. 27 (5) (2020)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
Solving tool indexing problem using harmony search algorithm with harmony refinement. Soft Comput. 23 (16) (2019)
Ranjan Kumar Barman, Anirban Mukhopadhyay, Ujjwal Maulik, Santasabuj Das
Identification of infectious disease-associated host genes using machine learning techniques. BMC Bioinform. 20 (1) (2019)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
Multi-objective uncapacitated facility location problem with customers' preferences: Pareto-based and weighted sum GA-based approaches. Soft Comput. 23 (23) (2019)
Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
Identification of Hub Genes and Key Modules in Stomach Adenocarcinoma Using nsNMF-Based Data Integration Technique. ICIT (2019)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
Solving Uncapacitated Facility Location Problem Using Heuristic Algorithms. Int. J. Nat. Comput. Res. 8 (2) (2019)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
A Weighted Rank aggregation approach towards crowd opinion analysis. Knowl. Based Syst. 149 (2018)
Soumen Atta, Priya Ranjan Sinha Mahapatra, Anirban Mukhopadhyay
Solving maximal covering location problem using genetic algorithm with local refinement. Soft Comput. 22 (12) (2018)
Anup Kumar Mallick, Anirban Mukhopadhyay
Different Schemes for Improving Fuzzy Clustering Through Supervised Learning. CICBA (1) (2018)
Sujoy Chatterjee, Nicolas Pasquier, Anirban Mukhopadhyay
Multi-objective Clustering Ensemble for Varying Number of Clusters. SITIS (2018)
L. Darrell Whitley, Swetha Varadarajan, Rachel Hirsch, Anirban Mukhopadhyay
Exploration and Exploitation Without Mutation: Solving the Jump Function in \varTheta (n) Time. PPSN (2) (2018)
Sk Md Mosaddek Hossain, Sumanta Ray, Anirban Mukhopadhyay
Preservation affinity in consensus modules among stages of HIV-1 progression. BMC Bioinform. 18 (1) (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
"Constrained crowd judgment analysis" by Sujoy Chatterjee, Anirban Mukhopadhyay and Malay Bhattacharyya with Martin Vesely as coordinator. SIGWEB Newsl. 2017 (Autumn) (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay
Genetic Algorithm-Based Matrix Factorization for Missing Value Prediction. CICBA (2) (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
Smart City Planning with Constrained Crowd Judgment Analysis. AAAI Spring Symposia (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
Judgment Analysis Based on Crowdsourced Opinions. ICDE (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
Quality Enhancement by Weighted Rank Aggregation of Crowd Opinion. CoRR (2017)
Sumanta Ray, Sk Md Mosaddek Hossain, Lutfunnesa Khatun, Anirban Mukhopadhyay
A comprehensive analysis on preservation patterns of gene co-expression networks during Alzheimer's disease progression. BMC Bioinform. 18 (1) (2017)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
Dependent judgment analysis: A Markov chain based approach for aggregating crowdsourced opinions. Inf. Sci. 396 (2017)
Monalisa Mandal, Anirban Mukhopadhyay
Multiobjective PSO-based rank aggregation: Application in gene ranking from microarray data. Inf. Sci. 385 (2017)
Bandana Barman, Paramita Biswas, Anirban Mukhopadhyay
Comparison of gene regulatory networks using adaptive neural network and self-organising map approaches over Huh7 hepatoma cell microarray data matrix. Int. J. Bio Inspired Comput. 8 (4) (2016)
Sujoy Chatterjee, Anirban Mukhopadhyay, Malay Bhattacharyya
Consensus of Dependent Opinions. CoRR (2016)
Sujoy Chatterjee, Enakshi Kundu, Anirban Mukhopadhyay
A Markov Chain based Ensemble Method for Crowdsourced Clustering. CoRR (2016)
Bandana Barman, Ria Kanjilal, Anirban Mukhopadhyay
Neuro-Fuzzy Controller Design to Navigate Unmanned Vehicle with Construction of Traffic Rules to Avoid Obstacles. Int. J. Uncertain. Fuzziness Knowl. Based Syst. 24 (3) (2016)
Bandana Barman, Anirban Mukhopadhyay
Polynomial equation models for yeast cell-cycle time series microarray data by analysing fidelity matrices of gene expression values. Int. J. Bioinform. Res. Appl. 12 (3) (2016)
Sanghamitra Bandyopadhyay, Sumanta Ray, Anirban Mukhopadhyay, Ujjwal Maulik
approaches for analysis and prediction of HIV-1-human protein-protein interactions. Briefings Bioinform. 16 (5) (2015)
Monalisa Mandal, Anirban Mukhopadhyay, Ujjwal Maulik
Prediction of protein subcellular localization by incorporating multiobjective PSO-based feature subset selection into the general form of Chou's PseAAC. Medical Biol. Eng. Comput. 53 (4) (2015)
Monalisa Mandal, Anirban Mukhopadhyay
A novel PSO-based graph-theoretic approach for identifying most relevant and non-redundant gene markers from gene expression data. Int. J. Parallel Emergent Distributed Syst. 30 (3) (2015)
Bandana Barman, Anirban Mukhopadhyay
Extracting Biological Significant Subnetworks from Protein-Protein Interactions Induced by Differentially Expressed Genes of HIV-1 Vpr Variants. Int. J. Syst. Dyn. Appl. 4 (4) (2015)
Sumanta Ray, Sinchani Chakraborty, Anirban Mukhopadhyay
DCoSpect: A Novel Differentially Coexpressed Gene Module Detection Algorithm Using Spectral Clustering. FICTA (2015)
Monalisa Mandal, Sheuli Maity, Anirban Mukhopadhyay
Partial rank aggregation using multiobjective genetic algorithm: Application in ranking genes. ICAPR (2015)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
A Survey of Multiobjective Evolutionary Clustering. ACM Comput. Surv. 47 (4) (2015)
Sanghamitra Bandyopadhyay, Sumanta Ray, Anirban Mukhopadhyay, Ujjwal Maulik
A multiobjective approach for identifying protein complexes and studying their association in multiple disorders. Algorithms Mol. Biol. 10 (2015)
Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Edgar Wingender
Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes. BMC Bioinform. 16 (2015)
Anirban Mukhopadhyay, Sumanta Ray, Ujjwal Maulik
Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach. BMC Bioinform. 15 (2014)
Monalisa Mandal, Anirban Mukhopadhyay
Predicting Protein Subcellular Localization: A Multiobjective PSO-based Feature Subset Selection from Amino Acid Sequence of Protein. ICIT (2014)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Carlos Artemio Coello Coello
A Survey of Multiobjective Evolutionary Algorithms for Data Mining: Part I. IEEE Trans. Evol. Comput. 18 (1) (2014)
Anirban Mukhopadhyay, Monalisa Mandal
Identifying Non-Redundant Gene Markers from Microarray Data: A Multiobjective Variable Length PSO-Based Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Carlos A. Coello Coello
Survey of Multiobjective Evolutionary Algorithms for Data Mining: Part II. IEEE Trans. Evol. Comput. 18 (1) (2014)
Bandana Barman, Anirban Mukhopadhyay
Detection of Differentially Expressed Genes in Wild Type HIV-1 Vpr and Two HIV-1 Mutant Vprs. FICTA (1) (2014)
Sanghamitra Bandyopadhyay, Saurav Mallik, Anirban Mukhopadhyay
A Survey and Comparative Study of Statistical Tests for Identifying Differential Expressionfrom Microarray Data. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Sumanta Ray, Sanghamitra Bandyopadhyay, Anirban Mukhopadhyay, Ujjwal Maulik
Incorporating fuzzy semantic similarity measure in detecting human protein complexes in PPI network: A multiobjective approach. FUZZ-IEEE (2013)
Monalisa Mandal, Anirban Mukhopadhyay, Ujjwal Maulik
Fuzzy rule-based classifier for microarray gene expression data by using a multiobjective PSO-based approach. FUZZ-IEEE (2013)
Saurav Mallik, Anirban Mukhopadhyay, Ujjwal Maulik
Integrated Statistical and Rule-Mining Techniques for Dna Methylation and Gene Expression Data Analysis. J. Artif. Intell. Soft Comput. Res. 3 (2) (2013)
Ujjwal Maulik, Anirban Mukhopadhyay, Debasis Chakraborty
Gene-Expression-Based Cancer Subtypes Prediction Through Feature Selection and Transductive SVM. IEEE Trans. Biomed. Eng. 60 (4) (2013)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Hybrid evolutionary multiobjective fuzzy c-medoids clustering of categorical data. HIMA (2013)
Monalisa Mandal, Anirban Mukhopadhyay
A PSO-based rank aggregation algorithm for ranking genes from microarray data. Panhellenic Conference on Informatics (2013)
Ujjwal Maulik, Anirban Mukhopadhyay, Malay Bhattacharyya, Lars Kaderali, Benedikt Brors, Sanghamitra Bandyopadhyay, Roland Eils
Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
An Interactive Approach to Multiobjective Clustering of Gene Expression Patterns. IEEE Trans. Biomed. Eng. 60 (1) (2013)
Saurav Mallik, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Integrated analysis of gene expression and genome-wide DNA methylation for tumor prediction: An association rule mining-based approach. CIBCB (2013)
Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender
Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell. Algorithms Mol. Biol. 8 (2013)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Gene Expression Data Analysis Using Multiobjective Clustering Improved with SVM Based Ensemble. Silico Biol. 11 (1-2) (2012)
Kartick Chandra Mondal, Nicolas Pasquier, Anirban Mukhopadhyay, Célia da Costa Pereira, Ujjwal Maulik, Andrea Tettamanzi
Prediction of Protein Interactions on HIV-1-Human PPI Data using a Novel Closure-based Integrated Approach. BIOINFORMATICS (2012)
Anirban Mukhopadhyay, Monalisa Mandal
A Hybrid Multiobjective Particle Swarm Optimization Approach for Non-redundant Gene Marker Selection. BIC-TA (1) (2012)
Kartick Chandra Mondal, Nicolas Pasquier, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
A New Approach for Association Rule Mining and Bi-clustering Using Formal Concept Analysis. MLDM (2012)
Bijay Baran Pal, Debjani Chakraborti, Papun Biswas, Anirban Mukhopadhyay
An application of genetic algorithm method for solving patrol manpower deployment problems through fuzzy goal programming in traffic management system: a case study. Int. J. Bio Inspired Comput. 4 (1) (2012)
Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender
δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data. WABI (2012)
Anirban Mukhopadhyay, Ujjwal Maulik
A multiobjective approach to MR brain image segmentation. Appl. Soft Comput. 11 (1) (2011)
Anirban Mukhopadhyay, Moumita De, Ujjwal Maulik
Selection of GO-Based Semantic Similarity Measures through AMDE for Predicting Protein-Protein Interactions. SEMCCO (2) (2011)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Discovery of MicroRNA markers: An SVM-based multiobjective feature selection approach. CIBCB (2011)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Simultaneous informative gene selection and clustering through multiobjective optimization. IEEE Congress on Evolutionary Computation (2010)
Ujjwal Maulik, Anirban Mukhopadhyay
Simulated annealing based automatic fuzzy clustering combined with ANN classification for analyzing microarray data. Comput. Oper. Res. 37 (8) (2010)
Kartick Chandra Mondal, Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Nicolas Pasquier
MOSCFRA: A Multi-objective Genetic Approach for Simultaneous Clustering and Gene Ranking. CIBB (2010)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Refining Genetic Algorithm Based Fuzzy Clustering through Supervised Learning for Unsupervised Cancer Classification. EvoBIO (2009)
Utpal Biswas, Ujjwal Maulik, Anirban Mukhopadhyay, Mrinal Kanti Naskar
Multiobjective evolutionary approach to cost-effective traffic grooming in unidirectional SONET/WDM rings. Photonic Netw. Commun. 18 (1) (2009)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Multiobjective Genetic Clustering with Ensemble Among Pareto Front Solutions: Application to MRI Brain Image Segmentation. ICAPR (2009)
Anirban Mukhopadhyay, Ujjwal Maulik
Unsupervised Satellite Image Segmentation by Combining SA Based Fuzzy Clustering with Support Vector Machine. ICAPR (2009)
Anirban Mukhopadhyay, Ujjwal Maulik
Unsupervised Pixel Classification in Satellite Imagery Using Multiobjective Fuzzy Clustering Combined With SVM Classifier. IEEE Trans. Geosci. Remote. Sens. 47 (4) (2009)
Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay
Finding Multiple Coherent Biclusters in Microarray Data Using Variable String Length Multiobjective Genetic Algorithm. IEEE Trans. Inf. Technol. Biomed. 13 (6) (2009)
Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay
Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes. BMC Bioinform. 10 (2009)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
A Novel Coherence Measure for Discovering Scaling Biclusters from Gene Expression Data. J. Bioinform. Comput. Biol. 7 (5) (2009)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Unsupervised cancer classification through SVM-boosted multiobjective fuzzy clustering with majority voting ensemble. IEEE Congress on Evolutionary Computation (2009)
Anirban Mukhopadhyay, Ujjwal Maulik
Towards improving fuzzy clustering using support vector machine: Application to gene expression data. Pattern Recognit. 42 (11) (2009)
Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Ujjwal Maulik
Analysis of microarray data using multiobjective variable string length genetic fuzzy clustering. IEEE Congress on Evolutionary Computation (2009)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Multiobjective Genetic Algorithm-Based Fuzzy Clustering of Categorical Attributes. IEEE Trans. Evol. Comput. 13 (5) (2009)
Indrajit Saha, Anirban Mukhopadhyay
Genetic Algorithm and Simulated Annealing based Approaches to Categorical Data Clustering. ICIIS (2008)
Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Ujjwal Maulik
Combining multiobjective fuzzy clustering and probabilistic ANN classifier for unsupervised pattern classification: Application to satellite image segmentation. IEEE Congress on Evolutionary Computation (2008)
Anirban Mukhopadhyay, Ujjwal Maulik
Unsupervised Pixel Classification in Satellite Imagery: A Two-stage Fuzzy Clustering Approach. Fundam. Informaticae 86 (4) (2008)
Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Michael Q. Zhang, Xuegong Zhang
Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure. IEEE Congress on Evolutionary Computation (2008)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Multiobjective Genetic Fuzzy Clustering of Categorical Attributes. ICIT (2007)
Sanghamitra Bandyopadhyay, Ujjwal Maulik, Anirban Mukhopadhyay
Multiobjective Genetic Clustering for Pixel Classification in Remote Sensing Imagery. IEEE Trans. Geosci. Remote. Sens. 45 (5-2) (2007)
Sanghamitra Bandyopadhyay, Anirban Mukhopadhyay, Ujjwal Maulik
An improved algorithm for clustering gene expression data. Bioinform. 23 (21) (2007)
Anirban Mukhopadhyay, Ujjwal Maulik
Multiobjective approach to categorical data clustering. IEEE Congress on Evolutionary Computation (2007)
Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay
Efficient Two-stage Fuzzy Clustering of Microarray Gene Expression Data. ICIT (2006)
Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Ujjwal Maulik
Clustering using Multi-objective Genetic Algorithm and its Application to Image Segmentation. SMC (2006)