Stanislaw Dunin-Horkawicz

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 9

Top Topics

Protein Sequences

Tertiary Structure

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinform. 39 (10) (2023)
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings Bioinform. 23 (1) (2022)
Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinform. 36 (22-23) (2021)
Vasilina Zayats, Agata P. Perlinska, Aleksandra I. Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna I. Sulkowska
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS Comput. Biol. 17 (10) (2021)
Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinform. 21 (1) (2020)
Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinform. 35 (16) (2019)
Martyna Nowacka, Pietro Boccaletto, Elzbieta Jankowska, Tomasz Jarzynka, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz
RRMdb - an evolutionary-oriented database of RNA recognition motif sequences. Database J. Biol. Databases Curation 2019 (2019)
Pietro Boccaletto, Marcin Magnus, Catarina Almeida, Adriana Zyla, Astha Astha, Radoslaw Pluta, Blazej Baginski, Elzbieta Jankowska, Stanislaw Dunin-Horkawicz, Tomasz K. Wirecki, Michal J. Boniecki, Filip Stefaniak, Janusz M. Bujnicki
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Res. 46 (Database-Issue) (2018)
Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. BMC Bioinform. 16 (2015)
Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean
MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Res. 41 (Database-Issue) (2013)
Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother
MODOMICS: a database of RNA modification pathways, update 2008 Nucleic Acids Res. 37 (Database-Issue) (2009)
Karolina L. Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M. Bujnicki
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinform. 8 (2007)
Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki
MODOMICS: a database of RNA modification pathways. Nucleic Acids Res. 34 (Database-Issue) (2006)