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pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models.
Kamil Kaminski
Jan Ludwiczak
Kamil Pawlicki
Vikram Alva
Stanislaw Dunin-Horkawicz
Published in:
Bioinform. (2023)
Keyphrases
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language model
sequence alignment
language modeling
sequence analysis
n gram
document retrieval
protein sequences
word clouds
information retrieval
retrieval model
statistical language models
probabilistic model
pairwise
query expansion
amino acids
test collection
speech recognition
language modelling
context sensitive
vector space model
smoothing methods
relevance model
language models for information retrieval
document ranking
amino acid sequences
language model for information retrieval
protein structure prediction
sequence data
retrieval effectiveness
query terms
information retrieval systems
protein function
translation model
binding sites
query specific
secondary structure
cross language information retrieval
ad hoc information retrieval