Jan Ludwiczak

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 7

Top Topics

Protein Sequences

Amino Acid Sequences

Multiple Alignment

Top Venues

Briefings Bioinform.

Publications

Karolis Martinkus, Jan Ludwiczak, Kyunghyun Cho, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas
AbDiffuser: Full-Atom Generation of In-Vitro Functioning Antibodies. CoRR (2023)
Karolis Martinkus, Jan Ludwiczak, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas
AbDiffuser: full-atom generation of in-vitro functioning antibodies. NeurIPS (2023)
Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinform. 39 (10) (2023)
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings Bioinform. 23 (1) (2022)
Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinform. 36 (22-23) (2021)
Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinform. 21 (1) (2020)
Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinform. 35 (16) (2019)