Ruhong Zhou

Publication Activity (10 Years)

Years Active: 2001-2021
Publications (10 Years): 2

Top Topics

Modeling Method

High Speed Railway

Top Venues

Briefings Bioinform.

Publications

Leili Zhang, Giacomo Domeniconi, Chih-Chieh Yang, Seung-gu Kang, Ruhong Zhou, Guojing Cong
CASTELO: clustered atom subtypes aided lead optimization - a combined machine learning and molecular modeling method. BMC Bioinform. 22 (1) (2021)
Leili Zhang, Giacomo Domeniconi, Chih-Chieh Yang, Seung-gu Kang, Ruhong Zhou, Guojing Cong
CASTELO: Clustered Atom Subtypes aidEd Lead Optimization - a combined machine learning and molecular modeling method. CoRR (2020)
Samuel Flores, Julie Bernauer, Seokmin Shin, Ruhong Zhou, Xuhui Huang
Multiscale modeling of macromolecular biosystems. Briefings Bioinform. 13 (4) (2012)
Zhen Xia, Payel Das, Tien Huynh, Ajay K. Royyuru, Ruhong Zhou
Modeling mutations of influenza virus with IBM Blue Gene. IBM J. Res. Dev. 55 (5) (2011)
Julie Bernauer, Samuel Flores, Xuhui Huang, Seokmin Shin, Ruhong Zhou
Session Introduction. Pacific Symposium on Biocomputing (2011)
Samuel Flores, Julie Bernauer, Xuhui Huang, Ruhong Zhou, Seokmin Shin
Session Introduction. Pacific Symposium on Biocomputing (2010)
Zhen Xia, Gulei Jin, Jun Zhu, Ruhong Zhou
Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus. Bioinform. 25 (18) (2009)
Payel Das, Jingyuan Li, Ajay K. Royyuru, Ruhong Zhou
Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity. J. Comput. Chem. 30 (11) (2009)
Ruhong Zhou, Maria Eleftheriou, Chung-Chau Hon, Robert S. Germain, Ajay K. Royyuru, Bruce J. Berne
Massively parallel molecular dynamics simulations of lysozyme unfolding. IBM J. Res. Dev. 52 (1-2) (2008)
Ruhong Zhou, Laxmi Parida, Kush Kapila, Sudhir P. Mudur
PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory. Bioinform. 23 (1) (2007)
Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Yuriy Zhestkov, Michael Pitman, Frank Suits, Alan Grossfield, Jed W. Pitera, William C. Swope, Ruhong Zhou, Scott Feller, Robert S. Germain
Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. International Conference on Computational Science (2) (2006)
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. IPDPS (2006)
Ruhong Zhou, Ajay K. Royyuru, Prasanna Athma, Frank Suits, B. David Silverman
Magnitude and spatial orientation of the hydrophobic moments of multi-domain proteins. Int. J. Bioinform. Res. Appl. 2 (2) (2006)
Lei Ye, Huajun Chen, Ting Liu, Zhaohui Wu, Jingyuan Li, Ruhong Zhou
A Wavelet Approach for the Analysis of Folding Trajectory of Protein Trp-cage. J. Bioinform. Comput. Biol. 3 (6) (2005)
Laxmi Parida, Ruhong Zhou
-Hairpin. PLoS Comput. Biol. 1 (1) (2005)
J. Feng, Laxmi Parida, Ruhong Zhou
Protein folding trajectory analysis using patterned clusters. APBC (2005)
Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou
Blue Matter, an application framework for molecular simulation on Blue Gene. J. Parallel Distributed Comput. 63 (7-8) (2003)
George A. Kaminski, Richard A. Friesner, Ruhong Zhou
A computationally inexpensive modification of the point dipole electrostatic polarization model for molecular simulations. J. Comput. Chem. 24 (3) (2003)
George A. Kaminski, Harry A. Stern, Bruce J. Berne, Richard A. Friesner, Yixiang X. Cao, Robert B. Murphy, Ruhong Zhou, Thomas A. Halgren
Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests. J. Comput. Chem. 23 (16) (2002)
Ruhong Zhou, B. David Silverman
Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling. Pacific Symposium on Biocomputing (2002)
Frances E. Allen, George S. Almási, Wanda Andreoni, Daniel K. Beece, Bruce J. Berne, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Paul Coteus, Paul Crumley, Alessandro Curioni, Monty Denneau, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Bruce M. Fleischer, Christos J. Georgiou, Robert S. Germain, Mark Giampapa, Donna L. Gresh, Manish Gupta, Ruud A. Haring, C. T. Howard Ho, Peter H. Hochschild, Susan Flynn Hummel, Tiziana Jonas, Derek Lieber, Glenn J. Martyna, Kiran K. Maturu, José E. Moreira, Dennis M. Newns, Matthew Newton, Robert Philhower, Thomas Picunko, Jed W. Pitera, Michael Pitman, Rick A. Rand, Ajay K. Royyuru, Valentina Salapura, Alda Sanomiya, Rahul S. Shah, Yuk Yin Sham, Sarabjeet Singh, Marc Snir, Frank Suits, Richard A. Swetz, William C. Swope, Nagesh K. Vishnumurthy, T. J. Christopher Ward, Henry S. Warren Jr., Ruhong Zhou
Blue Gene: A vision for protein science using a petaflop supercomputer. IBM Syst. J. 40 (2) (2001)