Roeland C. H. J. van Ham

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 3

Top Topics

Metric Learning

Dimensionality Reduction

Protein Function

Linguistic Features

Top Venues

Publications

Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel M. Gomez, Victoria E. Sánchez, Marcel J. T. Reinders
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function. Bioinform. 37 (2) (2021)
Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
Metric learning on expression data for gene function prediction. Bioinform. 36 (4) (2020)
Stavros Makrodimitris, Roeland C. H. J. van Ham, Marcel J. T. Reinders
Improving protein function prediction using protein sequence and GO-term similarities. Bioinform. 35 (7) (2019)
Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk
PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk
Correlated mutations via regularized multinomial regression. BMC Bioinform. 12 (2011)
Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk
SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (5) (2011)
Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink
Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction. PLoS Comput. Biol. 6 (11) (2010)
Simon van Mourik, Aalt D. J. van Dijk, Maarten de Gee, Richard G. H. Immink, Kerstin Kaufmann, Gerco C. Angenent, Roeland C. H. J. van Ham, Jaap Molenaar
Continuous-time modeling of cell fate determination in Arabidopsis flowers. BMC Syst. Biol. 4 (2010)
Peter Boyen, Frank Neven, Dries Van Dyck, Aalt D. J. van Dijk, Roeland C. H. J. van Ham
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks. ICDM (2009)
V. V. Mihaleva, H. A. Verhoeven, R. C. H. de Vos, R. D. Hall, Roeland C. H. J. van Ham
Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index. Bioinform. 25 (6) (2009)
Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham
Predicting sub-Golgi localization of type II membrane proteins. Bioinform. 24 (16) (2008)
Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham
Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control. Bioinform. 24 (1) (2008)
Mark W. E. J. Fiers, Ate van der Burgt, Erwin Datema, Joost C. W. de Groot, Roeland C. H. J. van Ham
High-throughput bioinformatics with the Cyrille2 pipeline system. BMC Bioinform. 9 (2008)
Yiannis Kourmpetis, Ate van der Burgt, Marco C. A. M. Bink, Cajo J. F. ter Braak, Roeland C. H. J. van Ham
The Use of Multiple Hierarchically Independent Gene Ontology Terms in Gene Function Prediction and Genome Annotation. Silico Biol. 7 (6) (2007)
Mark W. E. J. Fiers, Gijs A. Kleter, Herman Nijland, Jan Peter Nap, Roeland C. H. J. van Ham
Allermatch(tm), a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinform. 5 (2004)