Piotr Bala

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 11

Top Topics

Sequence Alignment

Parallel Algorithm

Top Venues

Euro-Par Workshops

Publications

Marek Nowicki, Lukasz Górski, Piotr Bala
Performance evaluation of Java/PCJ implementation of parallel algorithms on the cloud (extended version). Concurr. Comput. Pract. Exp. 35 (15) (2023)
Marek Nowicki, Lukasz Górski, Piotr Bala
PCJ Java library as a solution to integrate HPC, Big Data and Artificial Intelligence workloads. J. Big Data 8 (1) (2021)
Joel C. Adams, Godmar Back, Piotr Bala, Michael K. Bane, Kirk W. Cameron, Henri Casanova, Margaret Ellis, Rafael Ferreira da Silva, Gautam Jethwani, William Koch, Tabitha Lee, Tongyu Zhu
Lightning Talks of EduHPC 2020. EduHPC@SC (2020)
Marek Nowicki, Lukasz Górski, Piotr Bala
Performance Evaluation of Java/PCJ Implementation of Parallel Algorithms on the Cloud. Euro-Par Workshops (2020)
Zurab Bzhalava, Ardi Tampuu, Piotr Bala, Raul Vicente, Joakim Dillner
Machine Learning for detection of viral sequences in human metagenomic datasets. BMC Bioinform. 19 (1) (2018)
Marek Nowicki, Davit Bzhalava, Piotr Bala
Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library. J. Comput. Biol. 25 (8) (2018)
Marek Nowicki, Lukasz Górski, Piotr Bala
PCJ - Java Library for Highly Scalable HPC and Big Data Processing. HPCS (2018)
Marek Nowicki, Lukasz Górski, Piotr Bala
Evaluation of the Parallel Performance of the Java and PCJ on the Intel KNL Based Systems. PPAM (2) (2017)
Marek Nowicki, Magdalena Ryczkowska, Lukasz Górski, Piotr Bala
Big Data Analytics in Java with PCJ Library: Performance Comparison with Hadoop. PPAM (2) (2017)
Marek Nowicki, Davit Bzhalava, Piotr Bala
Massively Parallel Sequence Alignment with BLAST Through Work Distribution Implemented Using PCJ Library. ICA3PP (2017)
Lukasz Górski, Piotr Bala, Franciszek Rakowski
A case study of software load balancing policies implemented with the PGAS programming model. HPCS (2016)
Marek Nowicki, Maciej Marchwiany, Maciej Szpindler, Piotr Bala
On-line Service for Teaching Parallel Programming. Euro-Par Workshops (2015)
Veslava Osinska, Piotr Bala
Study of dynamics of structured knowledge: Qualitative analysis of different mapping approaches. J. Inf. Sci. 41 (2) (2015)
Lukasz Górski, Franciszek Rakowski, Piotr Bala
Parallel Differential Evolution in the PGAS Programming Model Implemented with PCJ Java Library. PPAM (1) (2015)
Magdalena Ryczkowska, Marek Nowicki, Piotr Bala
The Performance Evaluation of the Java Implementation of Graph500. PPAM (2) (2015)
Blazej Zyglarski, Piotr Bala, Jeremi Mizerski
Searching of Correlation of Weather and Cardiologic Events - Computer Methods for Relation Discovery and Events Prediction. HEALTHINF (2014)
Marek Nowicki, Lukasz Górski, Patryk Grabrczyk, Piotr Bala
PCJ - Java library for high performance computing in PGAS model. HPCS (2014)
Marcelina Borcz, Rafal Kluszczynski, Grzegorz Marczak, Krzysztof Benedyczak, Piotr Bala
Grid services for genomic research. Polish national grid perspective. HPCS (2014)
Jacek Kitowski, Kazimierz Wiatr, Piotr Bala, Marcelina Borcz, Andrzej Czyzewski, Lukasz Dutka, Rafal Kluszczynski, Jozef Kotus, Piotr Kustra, Norbert Meyer, Andrzej Milenin, Zofia Mosurska, Robert Pajak, Lukasz Rauch, Mariusz Sterzel, Dominik Stoklosa, Tomasz Szepieniec
Development of Domain-Specific Solutions Within the Polish Infrastructure for Advanced Scientific Research. PPAM (1) (2013)
Marek Nowicki, Piotr Bala
Parallel computations in Java with PCJ library. HPCS (2012)
Veslava Osinska, Piotr Bala, Michal Gawarkiewicz
Information Retrieval across Information Visualization. FedCSIS (2012)
Marek Nowicki, Piotr Bala
PCJ - New Approach for Parallel Computations in Java. PARA (2012)
Marcelina Borcz, Rafal Kluszczynski, Katarzyna Skonieczna, Tomasz Grzybowski, Piotr Bala
Processing the Biomedical Data on the Grid Using the UNICORE Workflow System. Euro-Par Workshops (2012)
Rafal Kluszczynski, Piotr Bala
Parallel Version of Image Segmentation Algorithm Using Polygonal Markov Fields. PPAM (1) (2011)
Krzysztof Benedyczak, Piotr Bala, Sven van den Berghe, Roger Menday, Bernd Schuller
Key aspects of the UNICORE 6 security model. Future Gener. Comput. Syst. 27 (2) (2011)
Maciej Panka, Piotr Bala
Data Centered Collaboration in a Mobile Environment. FedCSIS (2011)
Maciej Panka, Michal Chlebiej, Krzysztof Benedyczak, Piotr Bala
Visualization of multidimensional data on distributed mobile devices using interactive video streaming techniques. MIPRO (2011)
Maciej Panka, Michal Chlebiej, Krzysztof Benedyczak, Piotr Bala
Distributed Collaborative Visualization on Mobile Devices Using Interactive Video Streaming Techniques. PPAM (2) (2011)
Jacek Kitowski, Michal Turala, Kazimierz Wiatr, Lukasz Dutka, Marian Bubak, Tomasz Szepieniec, Marcin Radecki, Mariusz Sterzel, Zofia Mosurska, Robert Pajak, Renata Slota, Krzysztof Kurowski, Bartek Palak, Bartlomiej Balcerek, Piotr Bala, Maciej Filocha, Rafal Tylman
Polish Computational Research Space for International Scientific Collaborations. PPAM (1) (2011)
Blazej Zyglarski, Piotr Bala
Keywords Extraction - Selecting Keywords in Natural Language Texts with Markov Chains and Neural Networks. KMIS (2010)
Marcelina Borcz, Rafal Kluszczynski, Piotr Bala
Statistical Analysis of Biomolecular Data using UNICORE Workflows. BIOINFORMATICS (2010)
Achim Streit, Piotr Bala, Alexander Beck-Ratzka, Krzysztof Benedyczak, Sandra Bergmann, Rebecca Breu, Jason Milad Daivandy, Bastian Demuth, Anastasia Eifer, André Giesler, Björn Hagemeier, Sonja Holl, Valentina Huber, Nadine Lamla, Daniel Mallmann, Ahmed Shiraz Memon, Mohammad Shahbaz Memon, Michael Rambadt, Morris Riedel, Mathilde Romberg, Bernd Schuller, Tobias Schlauch, Andreas Schreiber, Thomas Soddemann, Wolfgang Ziegler
UNICORE 6 - Recent and Future Advancements. Ann. des Télécommunications 65 (11-12) (2010)
Krzysztof Benedyczak, Marcin Lewandowski, Piotr Bala
Towards a Common Authorization Infrastructure for the Grid. Euro-Par Workshops (2009)
Rafal Kluszczynski, Lukasz Mikulski, Marek Nowicki, Piotr Bala
Contests Hosting Service as a tool to teach programming. Ann. UMCS Informatica 9 (1) (2009)
Janusz Sierdzinski, Piotr Bala, Robert Rudowski, Marcin Grabowski, Grzegorz Karpinski, Bartosz Kaczynski
KARDIONET: Telecardiology Based on GRID Technology. MIE (2009)
Blazej Zyglarski, Piotr Bala
Neural Networks Aided Automatic Keywords Selection. IC3K (2009)
Blazej Zyglarski, Piotr Bala
Scientific Documents Management System - Application of Kohonens Neural Networks with Reinforcement in Keywords Extraction. KMIS (2009)
Krzysztof Benedyczak, Marcin Lewandowski, Aleksander Nowinski, Piotr Bala
UNICORE Virtual Organizations System. PPAM (2) (2009)
Pawel Lebioda, Piotr Bala
Estimating Metabolic Pathways Parameters Using Distributed Monte Carlo Method. ICCSA (2) (2008)
Jakub Jurkiewicz, Krzysztof Nowinski, Piotr Bala
Unicore 6 as a platform for desktop grid. IMCSIT (2008)
Michal Chlebiej, Krzysztof Nowinski, Piotr Scislo, Piotr Bala
Development of heart motion reconstruction framework based on the 4D echocardiographic data. Ann. UMCS Informatica 8 (2) (2008)
Rafal Kluszczynski, Piotr Bala
Supporting NAMD Application on the Grid Using GPE. PPAM (2007)
Michal Chlebiej, Krzysztof Nowinski, Piotr Scislo, Piotr Bala
Reconstruction of Heart Motion from 4D Echocardiographic Images. CAIP (2007)
Krzysztof Benedyczak, Aleksander Nowinski, Piotr Bala
Flexible Streaming Infrastructure for UNICORE. Euro-Par Workshops (2007)
Jaroslaw Mederski, Lukasz Mikulski, Piotr Bala
Asynchronous Parallel Molecular Dynamics Simulations. PPAM (2007)
Morris Riedel, Bernd Schuller, Daniel Mallmann, Roger Menday, Achim Streit, Bastian Tweddell, M. Shahbaz Memon, A. Shiraz Memon, Bastian Demuth, Thomas Lippert, David F. Snelling, Sven van den Berghe, Vivian Li, M. Drescher, A. Geiger, Gert Ohme, Andrea Vanni, Claudio Cacciari, S. Lanzarini, P. Malfetti, Krzysztof Benedyczak, Piotr Bala, Ralf Ratering, Alexander Lukichev
Web Services Interfaces and Open Standards Integration into the European UNICORE 6 Grid Middleware. EDOCW (2007)
Bernd Schuller, Bastian Demuth, Hartmut Mix, Katharina Rasch, Mathilde Romberg, Sulev Sild, Uko Maran, Piotr Bala, Enrico Del Grosso, Mosé Casalegno, Nadège Piclin, Marco Pintore, Wibke Sudholt, Kim K. Baldridge
Chemomentum - UNICORE 6 Based Infrastructure for Complex Applications in Science and Technology. Euro-Par Workshops (2007)
Ralf Ratering, Alexander Lukichev, Morris Riedel, Daniel Mallmann, Andrea Vanni, Claudio Cacciari, S. Lanzarini, Krzysztof Benedyczak, Marcelina Borcz, R. Kluszcynski, Piotr Bala, Gert Ohme
GridBeans: Support e-Science and Grid Applications. e-Science (2006)
Morris Riedel, Roger Menday, Achim Streit, Piotr Bala
A DRMAA-Based Target System Interface Framework for UNICORE. ICPADS (2) (2006)
Krzysztof Benedyczak, Aleksander Nowinski, Krzysztof Nowinski, Piotr Bala
UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids. PARA (2006)
Michal Chlebiej, Pawel Mikolajczak, Krzysztof Nowinski, Piotr Scislo, Piotr Bala
Generation of Dynamic Heart Model Based on 4D Echocardiographic Images. ICCSA (5) (2006)
Stefan Dydel, Krzysztof Benedyczak, Piotr Bala
Enabling Reconfigurable Hardware Accelerators for the Grid. PARELEC (2006)
Marcelina Borcz, Rafal Kluszczynski, Piotr Bala
BLAST Application on the GPE/UnicoreGS Grid. Euro-Par Workshops (2006)
Krzysztof Benedyczak, Michal Wronski, Aleksander Nowinski, Krzysztof Nowinski, Jaroslaw Wypychowski, Piotr Bala
UNICORE as Uniform Grid Environment for Life Sciences. EGC (2005)
Krzysztof Benedyczak, Aleksander Nowinski, Krzysztof Nowinski, Piotr Bala
Real-Time Visualization in the Grid Using UNICORE Middleware. PPAM (2005)
Rafal Metkowski, Piotr Bala
Parallel Computing in Java: Looking for the Most Effective RMI Implementation for Clusters. PPAM (2005)
Stefan Dydel, Piotr Bala
Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices. FPL (2004)
Jaroslaw Wypychowski, Jaroslaw Pytlinski, Lukasz Skorwider, Miroslaw Nazaruk, Krzysztof Benedyczak, Michal Wronski, Piotr Bala
Life Sciences Grid in EUROGRID and GRIP Projects. New Gener. Comput. 22 (2) (2004)
Piotr Bala, Krzysztof Benedyczak, Aleksander Nowinski, Krzysztof Nowinski, Jaroslaw Wypychowski
Interactive Visualization for the UNICORE Grid Environment. International Conference on Computational Science (2004)
Bogdan Lesyng, Piotr Bala, Dietmar W. Erwin
EUROGRID--European computational grid testbed. J. Parallel Distributed Comput. 63 (5) (2003)
Jaroslaw Pytlinski, Lukasz Skorwider, Krzysztof Benedyczak, Michal Wronski, Piotr Bala, Valentina Huber
Uniform Access to the Distributed Resources for the Computational Chemistry Using UNICORE. International Conference on Computational Science (2003)
Rafal Metkowski, Piotr Bala
Hierarchical Communication for the Parallel Simulations in the Distributed Environment. PPAM (2003)
Jaroslaw Pytlinski, Lukasz Skorwider, Piotr Bala, Miroslaw Nazaruk, Konrad Wawruch
BioGRID - Uniform Platform for Biomoleculago Nazar Applications (Research Note). Euro-Par (2002)
Piotr Bala, Jaroslaw Pytlinski, Miroslaw Nazaruk, Victor Alessandrini, Denis Girou, Dietmar W. Erwin, Daniel Mallmann, Jon MacLaren, John Brooke, Jan Frode Myklebust
BioGRID - An European Grid for Molecular Biology. HPDC (2002)
Aleksander Nowinski, Krzysztof Nowinski, Piotr Bala
Web Based Real Time System for Wavepacket Dynamics. International Conference on Computational Science (1) (2002)
Rafal Metkowski, Piotr Bala, Terry W. Clark
The Performance of Different Communication Mechanisms and Algorithms Used for Parallelization of Molecular Dynamics Code. PPAM (2001)
Piotr Bala, Terry W. Clark, L. Ridgway Scott
Application of Pfortran and Co-Array Fortran in the parallelization of the GROMOS96 molecular dynamics module. Sci. Program. 9 (1) (2001)
Piotr Bala, Terry W. Clark
Pfortran and Co-Array Fortran as Tools for Parallelization of a Large-Scale Scientific Application. Euro-Par (2000)
Piotr Bala, Pawel Grochowski, Krzysztof Nowinski, Terry W. Clark, Bogdan Lesyng, James Andrew McCammon
Advanced Calculations and Visualization of Enzymatic Reactions with the Combined Quantum Classical Molecular Dynamics Code. PARA (1998)
Piotr Bala, Terry W. Clark, Pawel Grochowski, Bogdan Lesyng, James Andrew McCammon
Parallel Version of a Quantum Classical Molecular Dynamics Code for Complex Molecular and Biomolecular Systems. PVM/MPI (1997)
Piotr Bala, Palo Grochowski, Bogdan Lesyng, James Andrew McCammon
Quantum-classical Molecular Dynamics and Its Computer Implementation. Comput. Chem. 19 (3) (1995)