Massively Parallel Sequence Alignment with BLAST Through Work Distribution Implemented Using PCJ Library.
Marek NowickiDavit BzhalavaPiotr BalaPublished in: ICA3PP (2017)
Keyphrases
- sequence alignment
- massively parallel
- pairwise
- parallel computing
- dynamic programming
- fine grained
- amino acids
- protein sequences
- multiple sequence alignment
- high performance computing
- phylogenetic analysis
- multiple alignment
- binding sites
- gpu accelerated
- parallel machines
- parallel computers
- comparative genomics
- mesh connected
- information systems
- processing elements
- protein structure
- supply chain
- smith waterman