Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library.
Marek NowickiDavit BzhalavaPiotr BalaPublished in: J. Comput. Biol. (2018)
Keyphrases
- massively parallel
- parallel computing
- sequence alignment
- search tools
- parallel computers
- graphics processing units
- computer architecture
- pairwise
- dynamic programming
- sequence databases
- high performance computing
- multithreading
- computing systems
- protein sequences
- binding sites
- parallel computation
- shared memory
- parallel architectures
- fine grained
- parallel execution
- parallel machines
- parallel programming
- amino acids
- map reduce
- database systems
- metadata
- parallel implementation
- personal information
- message passing
- file system
- similarity measure