Nikolaj Zimic

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 11

Top Topics

Computational Framework

Parameter Values

Gene Regulatory

Top Venues

Comput. Biol. Medicine

J. Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Fundam. Informaticae

Publications

Tadeja Rezen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman, Miha Moskon
Corrigendum to "Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models" [Comput. Biol. Med. 145 (2022) 105428]. Comput. Biol. Medicine 178 (2024)
Miha Moskon, Ziga Pusnik, Lidija Stanovnik, Nikolaj Zimic, Miha Mraz
A computational design of a programmable biological processor. Biosyst. 221 (2022)
Tadeja Rezen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman, Miha Moskon
Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models. Comput. Biol. Medicine 145 (2022)
Miha Moskon, Ziga Pusnik, Nikolaj Zimic, Miha Mraz
Field-programmable biological circuits and configurable (bio)logic blocks for distributed biological computing. Comput. Biol. Medicine 128 (2021)
Miha Moskon, Roman Komac, Nikolaj Zimic, Miha Mraz
Distributed biological computation: from oscillators, logic gates and switches to a multicellular processor and neural computing applications. Neural Comput. Appl. 33 (15) (2021)
Miha Moskon, Nikolaj Zimic, Miha Mraz
Grohar: Automated Visualization of Genome-Scale Metabolic Models and Their Pathways. J. Comput. Biol. 25 (5) (2018)
Jure Bordon, Miha Moskon, Nikolaj Zimic, Miha Mraz
Semi-quantitative Modelling of Gene Regulatory Processes with Unknown Parameter Values Using Fuzzy Logic and Petri Nets. Fundam. Informaticae 160 (1-2) (2018)
Anastasiia Vasylchenkova, Miha Mraz, Nikolaj Zimic, Miha Moskon
Classical Mechanics Approach Applied to Analysis of Genetic Oscillators. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (3) (2017)
Lidija Magdevska, Ziga Pusnik, Miha Mraz, Nikolaj Zimic, Miha Moskon
Computational design of synchronous sequential structures in biological systems. J. Comput. Sci. 18 (2017)
Ziva Rejc, Lidija Magdevska, Tilen Trselic, Timotej Osolin, Rok Vodopivec, Jakob Mraz, Eva Pavliha, Nikolaj Zimic, Tanja Cvitanovic, Damjana Rozman, Miha Moskon, Miha Mraz
Computational modelling of genome-scale metabolic networks and its application to CHO cell cultures. Comput. Biol. Medicine 88 (2017)
Manca Bizjak, Nikolaj Zimic, Miha Mraz, Miha Moskon
Computational Framework for Modeling Multiple Noncooperative Transcription Factor Binding and Its Application to the Analysis of Nuclear Factor Kappa B Oscillatory Response. J. Comput. Biol. 23 (12) (2016)
Mattia Petroni, Nikolaj Zimic, Miha Mraz, Miha Moskon
Stochastic Simulation Algorithm for Gene Regulatory Networks with Multiple Binding Sites. J. Comput. Biol. 22 (3) (2015)
Domen Soberl, Nikolaj Zimic, Ales Leonardis, Jaka Krivic, Miha Moskon
Hardware Implementation of FAST Algorithm for Mobile Applications. J. Signal Process. Syst. 79 (3) (2015)
Jure Bordon, Miha Moskon, Nikolaj Zimic, Miha Mraz
Fuzzy Logic as a Computational Tool for Quantitative Modelling of Biological Systems with Uncertain Kinetic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Martin Strazar, Miha Mraz, Nikolaj Zimic, Miha Moskon
An adaptive genetic algorithm for parameter estimation of biological oscillator models to achieve target quantitative system response. Nat. Comput. 13 (1) (2014)
Primoz Pecar, Miha Janez, Nikolaj Zimic, Miha Mraz, Iztok Lebar Bajec
The Ternary Quantum-dot Cellular Automata Memorizing Cell. ISVLSI (2009)
Miha Mraz, Zlatko Magdevski, Jelena Ficzko, Nikolaj Zimic, Miha Moskon, Miha Janez, Iztok Lebar Bajec
Towards Multistate Nanocomputing: The Implementation of a Primitive Fuzzy Controller. ICQNM (2008)
Nikolaj Zimic, Miha Mraz
Decomposition of a complex fuzzy controller for the truck-and-trailer reverse parking problem. Math. Comput. Model. 43 (5-6) (2006)
Miha Mraz, Iztok Lebar Bajec, Nikolaj Zimic
Fuzzy logic used for modelling and simulation of massive processes: A useful tool for nanotechnologies? Neural Networks and Computational Intelligence (2004)
Iztok Lebar Bajec, Primoz Trunk, D. Oseli, Nikolaj Zimic
Virtual coronary cineangiography. Comput. Biol. Medicine 33 (3) (2003)
Iztok Lebar Bajec, Nikolaj Zimic, Miha Mraz
Fuzzifying the Thoughts of Animats. IFSA (2003)
Miha Mraz, Nikolaj Zimic, Iztok Lapanja, Iztok Lebar Bajec
Fuzzy cellular automata: from theory to applications. ICTAI (2000)
Jernej Virant, Nikolaj Zimic, Miha Mraz
T-type fuzzy memory cells. Fuzzy Sets Syst. 102 (2) (1999)
Miha Mraz, Nikolaj Zimic, Jernej Virant
Intelligent bush fire spread prediction using fuzzy cellular automata. J. Intell. Fuzzy Syst. 7 (2) (1999)
Jernej Virant, Nikolaj Zimic
Attention to time in fuzzy logic. Fuzzy Sets Syst. 82 (1) (1996)
Jernej Virant, Nikolaj Zimic
Fuzzy automata with fuzzy relief. IEEE Trans. Fuzzy Syst. 3 (1) (1995)