Neil R. Smalheiser

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 16

Top Topics

Biomedical Literature

Similarity Metrics

Top Venues

Database J. Biol. Databases Curation

Frontiers Res. Metrics Anal.

J. Am. Medical Informatics Assoc.

J. Data Inf. Sci.

Publications

Yakub Sebastian, Neil R. Smalheiser
Editorial: Emerging areas in literature-based discovery. Frontiers Res. Metrics Anal. 8 (2023)
Neil R. Smalheiser, Arthur W. Holt
A web-based tool for automatically linking clinical trials to their publications. J. Am. Medical Informatics Assoc. 29 (5) (2022)
Chaomei Chen, David Chavalarias, Neil R. Smalheiser, Dietmar Wolfram
Editorial: Coronavirus Research Landscape: Resources, Utilities, and Analytic Studies. Frontiers Res. Metrics Anal. 6 (2021)
Mengqi Luo, Aaron M. Cohen, Sidharth Addepalli, Neil R. Smalheiser
Identifying main finding sentences in clinical case reports. Database J. Biol. Databases Curation 2020 (2020)
Neil R. Smalheiser, Mengqi Luo, Sidharth Addepalli, Xiaokai Cui
A manual corpus of annotated main findings of clinical case reports. Database J. Biol. Databases Curation 2019 (2019)
Neil R. Smalheiser, Aaron M. Cohen, Gary Bonifield
Unsupervised low-dimensional vector representations for words, phrases and text that are transparent, scalable, and produce similarity metrics that are not redundant with neural embeddings. J. Biomed. Informatics 90 (2019)
Halil Kilicoglu, Aurélie Névéol, Timothy Clark, Hua Xu, Neil R. Smalheiser
Methods and Tools to Enhance Rigor and Reproducibility of Biomedical Research. AMIA (2018)
Aaron M. Cohen, Zackary O. Dunivin, Neil R. Smalheiser
A probabilistic automated tagger to identify human-related publications. Database J. Biol. Databases Curation 2018 (2018)
Aaron M. Cohen, Neil R. Smalheiser
OHSU CLEF 2018 Task 2 Diagnostic Test Accuracy Ranking using Publication Type Cluster Similarity Measures. CLEF (Working Notes) (2018)
Neil R. Smalheiser, Gary Bonifield
Unsupervised Low-Dimensional Vector Representations for Words, Phrases and Text that are Transparent, Scalable, and produce Similarity Metrics that are Complementary to Neural Embeddings. CoRR (2018)
Neil R. Smalheiser, Aaron M. Cohen
Design of a generic, open platform for machine learning-assisted indexing and clustering of articles in PubMed, a biomedical bibliographic database. Data Inf. Manag. 2 (1) (2018)
Adam K. Kehoe, Vetle I. Torvik, Matthew B. Ross, Neil R. Smalheiser
Predicting MeSH Beyond MEDLINE. SWM@WSDM (2017)
Neil R. Smalheiser, Aaron M. Cohen
Call for Papers! Special Issue on Models of Discovery: Mining the Scientific Literature. J. Data Inf. Sci. 2 (2) (2017)
Byron C. Wallace, Anna Noel-Storr, Iain James Marshall, Aaron M. Cohen, Neil R. Smalheiser, James Thomas
Identifying reports of randomized controlled trials (RCTs) via a hybrid machine learning and crowdsourcing approach. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Neil R. Smalheiser
Rediscovering Don Swanson: The Past, Present and Future of Literature-based Discovery. J. Data Inf. Sci. 2 (4) (2017)
Yufang Peng, Gary Bonifield, Neil R. Smalheiser
Gaps within the Biomedical Literature: Initial Characterization and Assessment of Strategies for Discovery. Frontiers Res. Metrics Anal. 2 (2017)
Vojtech Huser, Alexa T. McCray, Neil R. Smalheiser, Asba Tasneem, Chunhua Weng
ClinicalTrials.gov: Adding Value through Informatics. AMIA (2015)
Aaron M. Cohen, Neil R. Smalheiser, Marian S. McDonagh, Clement T. Yu, Clive E. Adams, John M. Davis, Philip S. Yu
Automated confidence ranked classification of randomized controlled trial articles: an aid to evidence-based medicine. J. Am. Medical Informatics Assoc. 22 (3) (2015)
Yu Jiang, Can Lin, Weiyi Meng, Clement T. Yu, Aaron M. Cohen, Neil R. Smalheiser
Rule-based deduplication of article records from bibliographic databases. Database J. Biol. Databases Curation 2014 (2014)
Neil R. Smalheiser, Can Lin, Lifeng Jia, Yu Jiang, Aaron M. Cohen, Clement T. Yu, John M. Davis, Clive E. Adams, Marian S. McDonagh, Weiyi Meng
Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers. Health Inf. Sci. Syst. 2 (1) (2014)
Liangcai Shu, Can Lin, Weiyi Meng, Yue Han, Clement T. Yu, Neil R. Smalheiser
A framework for entity resolution with efficient blocking. IRI (2012)
Neil R. Smalheiser
Literature-based discovery: Beyond the ABCs. J. Assoc. Inf. Sci. Technol. 63 (2) (2012)
Henrique Andrade, Neil R. Smalheiser
Editorial for Special Issue: ACM IHI 2010 Best Papers. J. Medical Syst. 35 (5) (2011)
Neil R. Smalheiser, Wei Zhou, Vetle I. Torvik
Distribution of "Characteristic" Terms in MEDLINE Literatures. Inf. 2 (2) (2011)
Aaron M. Cohen, Clive E. Adams, John M. Davis, Clement T. Yu, Philip S. Yu, Weiyi Meng, Lorna Duggan, Marian McDonagh, Neil R. Smalheiser
Evidence-based medicine, the essential role of systematic reviews, and the need for automated text mining tools. IHI (2010)
Neil R. Smalheiser, Vetle I. Torvik
Author name disambiguation. Annu. Rev. Inf. Sci. Technol. 43 (1) (2009)
Vetle I. Torvik, Allen H. Renear, Neil R. Smalheiser, Catherine C. Marshall
Beyond (simple) reading: Strategies, discoveries, and collaborations. ASIST (2009)
Vetle I. Torvik, Neil R. Smalheiser
Author name disambiguation in MEDLINE. ACM Trans. Knowl. Discov. Data 3 (3) (2009)
Neil R. Smalheiser, Vetle I. Torvik, Wei Zhou
Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE. Comput. Methods Programs Biomed. 94 (2) (2009)
Vetle I. Torvik, Neil R. Smalheiser
A quantitative model for linking two disparate sets of articles in MEDLINE. Bioinform. 23 (13) (2007)
Wei Zhou, Clement T. Yu, Neil R. Smalheiser, Vetle I. Torvik, Jie Hong
Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature. SIGIR (2007)
Wei Zhou, Clement T. Yu, Vetle I. Torvik, Neil R. Smalheiser
A Concept-Based Framework for Passage Retrieval at Genomics. TREC (2006)
Don R. Swanson, Neil R. Smalheiser, Vetle I. Torvik
Ranking indirect connections in literature-based discovery: The role of medical subject headings. J. Assoc. Inf. Sci. Technol. 57 (11) (2006)
Wei Zhang, Clement T. Yu, Neil R. Smalheiser, Vetle I. Torvik
Segmentation of Publication Records of Authors from the Web. ICDE (2006)
Wei Zhou, Vetle I. Torvik, Neil R. Smalheiser
ADAM: another database of abbreviations in MEDLINE. Bioinform. 22 (22) (2006)
Neil R. Smalheiser
Erratum to publisher. J. Assoc. Inf. Sci. Technol. 56 (9) (2005)
Neil R. Smalheiser
The Arrowsmith Project: 2005 Status Report. ALT (2005)
Vetle I. Torvik, Marc Weeber, Don R. Swanson, Neil R. Smalheiser
A probabilistic similarity metric for Medline records: A model for author name disambiguation. J. Assoc. Inf. Sci. Technol. 56 (2) (2005)
Neil R. Smalheiser
The Arrowsmith Project: 2005 Status Report. Discovery Science (2005)
Neil R. Smalheiser, Vetle I. Torvik
A population-based statistical approach identifies parameters characteristic of human microRNA-mRNA interactions. BMC Bioinform. 5 (2004)
Vetle I. Torvik, Marc Weeber, Don R. Swanson, Neil R. Smalheiser
A Probabilistic Similarity Metric for Medline Records: A Model for Author Name Disambiguation. AMIA (2003)
Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong
Towards effective and rewarding data sharing. Neuroinformatics 1 (3) (2003)
Neil R. Smalheiser, Carole L. Palmer, Don R. Swanson, Padmini Srinivasan, Marti A. Hearst
Literature-based discovery: New trends and techniques. Sponsored by SIG HCI. ASIST (2003)
Don R. Swanson, Neil R. Smalheiser, Abraham Bookstein
Information discovery from complementary literatures: Categorizing viruses as potential weapons. J. Assoc. Inf. Sci. Technol. 52 (10) (2001)
Don R. Swanson, Neil R. Smalheiser
Implicit Text Linkages between Medline Records: Using Arrowsmith as an Aid to Scientific Discovery. Libr. Trends 48 (1) (1999)
Don R. Swanson, Neil R. Smalheiser
An Interactive System for Finding Complementary Literatures: A Stimulus to Scientific Discovery. Artif. Intell. 91 (2) (1997)
Don R. Swanson, Neil R. Smalheiser
Undiscovered Public Knowledge: A Ten-Year Update. KDD (1996)