Liang Cheng

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 31

Top Topics

Protein Homology

Diabetes Mellitus

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Liang Cheng
Attention mechanism models for precision medicine. Briefings Bioinform. 25 (4) (2024)
Ping Wang, Sainan Zhang, Changlu Qi, Chao Wang, Zijun Zhu, Lei Shi, Liang Cheng, Xue Zhang
Blood microbial analyses reveal long-term effects of SARS-CoV-2 infection on patients who recovered from COVID-19. Comput. Biol. Medicine 168 (2024)
Ping Wang, Sainan Zhang, Guoyou He, Meiyu Du, Changlu Qi, Ruyue Liu, Siyuan Zhang, Liang Cheng, Lei Shi, Xue Zhang
. Nucleic Acids Res. 51 (D1) (2023)
Changlu Qi, Yiting Cai, Kai Qian, Xuefeng Li, Jialiang Ren, Ping Wang, Tongze Fu, Tianyi Zhao, Liang Cheng, Lei Shi, Xue Zhang
gutMDisorder v2.0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions. Nucleic Acids Res. 51 (D1) (2023)
Yuqi Sheng, Jiashuo Wu, Xiangmei Li, Jiayue Qiu, Ji Li, Qinyu Ge, Liang Cheng, Junwei Han
iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network. Briefings Bioinform. 24 (2) (2023)
Sainan Zhang, Xingwang Liu, Yue Zhao, Ping Wang, Rui Yu, Peigang Xu, Yue Jiang, Liang Cheng
Microbiome characteristics description of COVID-19 patients based on bulk RNA-seq and scRNA-Seq data. Comput. Biol. Medicine 165 (2023)
Junjie Wang, Jie Hu, Huiting Sun, Mengdie Xu, Yun Yu, Yun Liu, Liang Cheng
MGPLI: exploring multigranular representations for protein-ligand interaction prediction. Bioinform. 38 (21) (2022)
Liang Cheng, Changlu Qi, Haixiu Yang, Minke Lu, Yiting Cai, Tongze Fu, Jialiang Ren, Qu Jin, Xue Zhang
gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites. Nucleic Acids Res. 50 (D1) (2022)
Zijun Zhu, Sainan Zhang, Ping Wang, Xinyu Chen, Jianxing Bi, Liang Cheng, Xue Zhang
A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19. Briefings Bioinform. 23 (1) (2022)
Hailin Sun, Dali Zhang, Soon-Yi Wu, Liang Cheng
A modified exchange algorithm for distributional robust optimization and applications in risk management. Int. Trans. Oper. Res. 29 (1) (2022)
Changlu Qi, Chao Wang, Lingling Zhao, Zijun Zhu, Ping Wang, Sainan Zhang, Liang Cheng, Xue Zhang
SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues. Nucleic Acids Res. 50 (D1) (2022)
Tianyi Zhao, Yang Hu, Liang Cheng
Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches. Briefings Bioinform. 22 (4) (2021)
Yuqi Sheng, Ying Jiang, Yang Yang, Xiangmei Li, Jiayue Qiu, Jiashuo Wu, Liang Cheng, Junwei Han
CNA2Subpathway: identification of dysregulated subpathway driven by copy number alterations in cancer. Briefings Bioinform. 22 (5) (2021)
Xudong Han, Qingfei Kong, Chonghui Liu, Liang Cheng, Junwei Han
SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs. Bioinform. 37 (16) (2021)
Liang Cheng, Xudong Han, Zijun Zhu, Changlu Qi, Ping Wang, Xue Zhang
Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2. Briefings Bioinform. 22 (2) (2021)
Liang Cheng, Changlu Qi, He Zhuang, Tongze Fu, Xue Zhang
gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions. Nucleic Acids Res. 48 (Database-Issue) (2020)
Lingling Zhao, Junjie Wang, Liang Cheng, Chunyu Wang
OntoSem: an Ontology Semantic Representation Methodology for Biomedical Domain. BIBM (2020)
Zijun Zhu, Xudong Han, Liang Cheng
Identification of gene signature associated with type 2 diabetes mellitus by integrating mutation and expression data. BIBM (2020)
Junwei Han, Xudong Han, Qingfei Kong, Liang Cheng
psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression. Bioinform. 36 (7) (2020)
Tianyi Zhao, Yang Hu, Jiajie Peng, Liang Cheng, Pier Luigi Martelli
DeepLGP: a novel deep learning method for prioritizing lncRNA target genes. Bioinform. 36 (16) (2020)
Liang Cheng, Pingping Wang, Rui Tian, Song Wang, Qinghua Guo, Meng Luo, Wenyang Zhou, Guiyou Liu, Huijie Jiang, Qinghua Jiang
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse. Nucleic Acids Res. 47 (Database-Issue) (2019)
Tianyi Zhao, Yang Hu, Tianyi Zang, Liang Cheng
Identifying Alzheimer's disease-related proteins by LRRGD. BMC Bioinform. (18) (2019)
Liang Cheng, Haixiu Yang, Hengqiang Zhao, Xiaoya Pei, Hongbo Shi, Jie Sun, Yunpeng Zhang, Zhenzhen Wang, Meng Zhou
MetSigDis: a manually curated resource for the metabolic signatures of diseases. Briefings Bioinform. 20 (1) (2019)
Yang Hu, Jun Zhang, Tianyi Zhao, Liang Cheng, Tianyi Zang
A Novel Method for Identifying Alzheimer's Disease-related Proteins. BIBM (2018)
Liang Cheng, Yang Hu, Jie Sun, Meng Zhou, Qinghua Jiang
DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function. Bioinform. 34 (11) (2018)
Yang Hu, Tianyi Zhao, Ningyi Zhang, Tianyi Zang, Jun Zhang, Liang Cheng
Identifying diseases-related metabolites using random walk. BMC Bioinform. (5) (2018)
Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng
DisSetSim: an online system for calculating similarity between disease sets. J. Biomed. Semant. (1) (2017)
Tianyi Zhao, Ningyi Zhang, Ying Zhang, Jun Ren, Peigang Xu, Zhiyan Liu, Liang Cheng, Yang Hu
A novel method to identify pre-microRNA in various species knowledge base on various species. J. Biomed. Semant. (1) (2017)
Tianyi Zhao, Ningyi Zhang, Jun Ren, Peigang Xu, Zhiyan Liu, Liang Cheng, Yang Hu
A novel method to identify pre-microRNA in various species knowledge base. BIBM (2016)
Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng
DisSetSim: An online system for calculating similarity between disease sets. BIBM (2016)
Yang Hu, Meng Zhou, Hongbo Shi, Hong Ju, Qinghua Jiang, Liang Cheng
InfDisSim: A novel method for measuring disease similarity based on information flow. BIBM (2016)
Liang Cheng, Jie Li, Yang Hu, Yue Jiang, Yongzhuang Liu, Yan-Shuo Chu, Zhenxing Wang, Yadong Wang
Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Peigang Xu, Yadong Wang, Liang Cheng, Tianyi Zang
Alignment results of SOBOM for OAEI 2010. OM (2010)