Kyongbum Lee

Publication Activity (10 Years)

Years Active: 2004-2017
Publications (10 Years): 4

Top Topics

Optimization Strategies

Inherent Uncertainty

Shortest Distance

Metabolic Networks

Top Venues

BMC Syst. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Neda Hassanpour, Nicholas Alden, Kyongbum Lee, Soha Hassoun
An Advanced Workflow for Metabolite Annotation. BCB (2017)
Gautham Vivek Sridharan, Ehsan Ullah, Soha Hassoun, Kyongbum Lee
Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity. BMC Syst. Biol. 9 (2015)
Ehsan Ullah, Mark Walker, Kyongbum Lee, Soha Hassoun
PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Mona Yousofshahi, Sara Manteiga, Charmian Wu, Kyongbum Lee, Soha Hassoun
PROXIMAL: a method for Prediction of Xenobiotic Metabolism. BMC Syst. Biol. 9 (2015)
Mona Yousofshahi, Michael Orshansky, Kyongbum Lee, Soha Hassoun
Probabilistic strain optimization under constraint uncertainty. BMC Syst. Biol. 7 (2013)
Mona Yousofshahi, Michael Orshansky, Kyongbum Lee, Soha Hassoun
Gene modification identification under flux capacity uncertainty. DAC (2013)
Gautham Vivek Sridharan, Michael Yi, Soha Hassoun, Kyongbum Lee
Metabolic Flux-Based Modularity using Shortest Retroactive distances. BMC Syst. Biol. 6 (2012)
Gautham Vivek Sridharan, Soha Hassoun, Kyongbum Lee
Identification of Biochemical Network Modules Based on Shortest Retroactive Distances. PLoS Comput. Biol. 7 (11) (2011)
Brett A. Boghigian, Hai Shi, Kyongbum Lee, Blaine A. Pfeifer
Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design. BMC Syst. Biol. 4 (2010)
Ehsan Ullah, Kyongbum Lee, Soha Hassoun
An algorithm for identifying dominant-edge metabolic pathways. ICCAD (2009)
Jeongah Yoon, Yaguang Si, Ryan Nolan, Kyongbum Lee
Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection. Bioinform. 23 (18) (2007)
Jeongah Yoon, Kyongbum Lee
Metabolic Flux Profiling of Reaction Modules in Liver Drug Transformation. Pacific Symposium on Biocomputing (2007)
Foteini Makrydaki, Kyongbum Lee, Christos Georgakis
Tendency Stoichiometric Modeling of Metabolic Pathways. ACC (2007)
Jeongah Yoon, Anselm Blumer, Kyongbum Lee
An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality. Bioinform. 22 (24) (2006)
Kyongbum Lee, Daehee Hwang, Tadaaki Yokoyama, George Stephanopoulos, Gregory Stephanopoulos, Martin L. Yarmush
Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data. Bioinform. 20 (6) (2004)