Jie Liang

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 20

Top Topics

Mechanical Properties

Monte Carlo Method

Top Venues

IEEE J. Biomed. Health Informatics

PLoS Comput. Biol.

Publications

Boshen Wang, Xue Lei, Wei Tian, Alan Perez-Rathke, Yan-Yuan Tseng, Jie Liang
Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations. Briefings Bioinform. 24 (4) (2023)
Bowei Ye, Boshen Wang, Jie Liang
Predicting Pathology of Missense Mutations through Protein-Specific Evolutionary Pattern. EMBC (2023)
Qing Cheng, Pourya Delafrouz, Jie Liang, Chun Liu, Jie Shen
Modeling and simulation of cell nuclear architecture reorganization process. J. Comput. Phys. 449 (2022)
Qing Cheng, Pourya Delafrouz, Jie Liang, Chun Liu, Jie Shen
Modeling and simulation of nuclear architecture reorganization process using a phase field approach. CoRR (2021)
Yiyu Pang, Jie Liang
Inferring initial state of the ancestral network of cellular fate decision: a case study of phage lambda. EMBC (2021)
Constantinos S. Pattichis, Constantinos Pitris, Jie Liang, Yuan-Ting Zhang
Guest Editorial on the Special Issue on Integrating Informatics and Technology for Precision Medicine. IEEE J. Biomed. Health Informatics 23 (1) (2019)
Alan Perez-Rathke, Samira Mali, Lin Du, Jie Liang
Alterations in Chromatin Folding Patterns in Cancer Variant-Enriched Loci. BHI (2019)
Boshen Wang, Wei Tian, Xue Lei, Alan Perez-Rathke, Yan Yuan Tseng, Jie Liang
Structure-based Method for Predicting Deleterious Missense SNPs. BHI (2019)
Anna Terebus, Youfang Cao, Jie Liang
Sensitivities of Regulation Intensities in Feed-Forward Loops with Multistability. EMBC (2019)
Boshen Wang, Alan Perez-Rathke, Renhao Li, Jie Liang
A general method for predicting amino acid residues experiencing hydrogen exchange. BHI (2018)
Wei Tian, Jie Liang
On quantification of geometry and topology of protein pockets and channels for assessing mutation effects. BHI (2018)
Wei Tian, Chang Chen, Xue Lei, Jieling Zhao, Jie Liang
CASTp 3.0: computed atlas of surface topography of proteins. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Jie Liang, Michalis E. Zervakis, Julien Penders
Guest Editorial IEEE BHI 2017. IEEE J. Biomed. Health Informatics 22 (2) (2018)
Wei Tian, Meishan Lin, Hammad Naveed, Jie Liang
Efficient computation of transfer free energies of amino acids in beta-barrel membrane proteins. Bioinform. 33 (11) (2017)
Gamze Gürsoy, Yun Xu, Jie Liang
Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS Comput. Biol. 13 (7) (2017)
Stephen Redmond, Jie Liang, Constantinos S. Pattichis
Guest Editorial IEEE BHI 2016. IEEE J. Biomed. Health Informatics 21 (2) (2017)
Chihua Ma, Timothy Luciani, Anna Terebus, Jie Liang, G. Elisabeta Marai
PRODIGEN: visualizing the probability landscape of stochastic gene regulatory networks in state and time space. BMC Bioinform. 18 (S-2) (2017)
Youfang Cao, Anna Terebus, Jie Liang
Accurate Chemical Master Equation Solution Using Multi-Finite Buffers. Multiscale Model. Simul. 14 (2) (2016)
Gamze Giirsoy, Anna Terebus, Youfang Cao, Jie Liang
Mechanisms of stochastic focusing and defocusing in biological reaction networks: Insight from accurate Chemical Master Equation (ACME) solutions. EMBC (2016)
Walter G. Besio, Leslie Ying, Jie Liang, Nigel H. Lovell, Carmen C. Y. Poon, May D. Wang
Guest Editorial EMBC 2014. IEEE J. Biomed. Health Informatics 19 (4) (2015)
Anna Terebus, Youfang Cao, Jie Liang
Exact computation of probability landscape of stochastic networks of Single Input and Coupled Toggle Switch Modules. EMBC (2014)
Gamze Gürsoy, Yun Xu, Jie Liang
Computational predictions of structures of multichromosomes of budding yeast. EMBC (2014)
Wei Tian, Youfang Cao, Amber Ismael, David Stone, Jie Liang
Roles of regulated internalization in the polarization of cell surface receptors. EMBC (2014)
Yingzi Li, Hammad Naveed, Jie Liang, Lisa X. Xu
Effects of mechanical properties on tumor invasion: Insights from a cellular model. EMBC (2014)
Ke Tang, Jinfeng Zhang, Jie Liang
Fast Protein Loop Sampling and Structure Prediction Using Distance-Guided Sequential Chain-Growth Monte Carlo Method. PLoS Comput. Biol. 10 (4) (2014)
Marco Maggioni, Tanya Y. Berger-Wolf, Jie Liang
GPU-Based Steady-State Solution of the Chemical Master Equation. IPDPS Workshops (2013)
Jieling Zhao, Hammad Naveed, Sema Kachalo, Youfang Cao, Wei Tian, Jie Liang
Dynamic mechanical finite element model of biological cells for studying cellular pattern formation. EMBC (2013)
Bin He, Richard Baird, Robert J. Butera, Aniruddha Datta, Steven George, Bruce Hecht, Alfred O. Hero III, Gianluca Lazzi, Raphael C. Lee, Jie Liang, Michael R. Neuman, Grace C. Y. Peng, Eric J. Perreault, Melur Ramasubramanian, May D. Wang, John P. Wikswo, Guang-Zhong Yang, Yuan-Ting Zhang
Grand Challenges in Interfacing Engineering With Life Sciences and Medicine. IEEE Trans. Biomed. Eng. 60 (3) (2013)
Youfang Cao, Hammad Naveed, Claire Liang, Jie Liang
Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis. EMBC (2013)
Yingzi Li, Hammad Naveed, Sema Kachalo, Lisa X. Xu, Jie Liang
Mechanical forces mediate localized topological change in epithelia. EMBC (2011)
Marco Maggioni, Marco D. Santambrogio, Jie Liang
GPU-accelerated Chemical Similarity Assessment for Large Scale Databases. ICCS (2011)
Jie Liang, Hong Qian
Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity. J. Comput. Sci. Technol. 25 (1) (2009)
Youfang Cao, Jie Liang
Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability. BMC Syst. Biol. 2 (2008)
Jerry Osagie Ebalunode, Zheng Ouyang, Jie Liang, Weifan Zheng
Novel Approach to Structure-Based Pharmacophore Search Using Computational Geometry and Shape Matching Techniques. J. Chem. Inf. Model. 48 (4) (2008)
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang
Topology Independent Protein Structural Alignment. WABI (2007)
Piotr Berman, Bhaskar DasGupta, Jie Liang
Foreword. Algorithmica 48 (4) (2007)
Joe Dundas, Zheng Ouyang, Jeffery Tseng, T. Andrew Binkowski, Yaron Turpaz, Jie Liang
CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
T. Andrew Binkowski, Patrick Freeman, Jie Liang
pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Changyu Hu II, Xiang Li, Jie Liang
Developing optimal non-linear scoring function for protein design. Bioinform. 20 (17) (2004)
T. Andrew Binkowski, Shapor Naghibzadeh, Jie Liang
CASTp: Computed Atlas of Surface Topography of proteins. Nucleic Acids Res. 31 (13) (2003)