Jiarui Lu

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 37

Top Topics

Iterative Refinement

Protein Structural

Top Venues

Publications

Tom Gunter, Zirui Wang, Chong Wang, Ruoming Pang, Andy Narayanan, Aonan Zhang, Bowen Zhang, Chen Chen, Chung-Cheng Chiu, David Qiu, Deepak Gopinath, Dian Ang Yap, Dong Yin, Feng Nan, Floris Weers, Guoli Yin, Haoshuo Huang, Jianyu Wang, Jiarui Lu, John Peebles, Ke Ye, Mark Lee, Nan Du, Qibin Chen, Quentin Keunebroek, Sam Wiseman, Syd Evans, Tao Lei, Vivek Rathod, Xiang Kong, Xianzhi Du, Yanghao Li, Yongqiang Wang, Yuan Gao, Zaid Ahmed, Zhaoyang Xu, Zhiyun Lu, Al Rashid, Albin Madappally Jose, Alec Doane, Alfredo Bencomo, Allison Vanderby, Andrew Hansen, Ankur Jain, Anupama Mann Anupama, Areeba Kamal, Bugu Wu, Carolina Brum, Charlie Maalouf, Chinguun Erdenebileg, Chris Dulhanty, Dominik Moritz, Doug Kang, Eduardo Jimenez, Evan Ladd, Fangping Shi, Felix Bai, Frank Chu, Fred Hohman, Hadas Kotek, Hannah Gillis Coleman, Jane Li, Jeffrey P. Bigham, Jeffery Cao, Jeff Lai, Jessica Cheung, Jiulong Shan, Joe Zhou, John Li, Jun Qin, Karanjeet Singh, Karla Vega, Kelvin Zou, Laura Heckman, Lauren Gardiner, Margit Bowler, Maria Cordell, Meng Cao, Nicole Hay, Nilesh Shahdadpuri, Otto Godwin, Pranay Dighe, Pushyami Rachapudi, Ramsey Tantawi, Roman Frigg, Sam Davarnia, Sanskruti Shah, Saptarshi Guha, Sasha Sirovica, Shen Ma, Shuang Ma, Simon Wang, Sulgi Kim, Suma Jayaram, Vaishaal Shankar, Varsha Paidi, Vivek Kumar, Xin Wang, Xin Zheng, Walker Cheng
Apple Intelligence Foundation Language Models. CoRR (2024)
Shengchao Liu, Chengpeng Wang, Jiarui Lu, Weili Nie, Hanchen Wang, Zhuoxinran Li, Bolei Zhou, Jian Tang
Unsupervised Discovery of Steerable Factors When Graph Deep Generative Models Are Entangled. Trans. Mach. Learn. Res. 2024 (2024)
Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michal Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W. Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters
Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets. ICLR (2024)
Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan, Aurélie C. Lozano, Payel Das, Jian Tang
ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation. CoRR (2024)
Yizhe Zhang, Jiarui Lu, Navdeep Jaitly
Probing the Multi-turn Planning Capabilities of LLMs via 20 Question Games. ACL (1) (2024)
Jiarui Lu, Bozitao Zhong, Zuobai Zhang, Jian Tang
Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling. ICLR (2024)
Guoli Yin, Haoping Bai, Shuang Ma, Feng Nan, Yanchao Sun, Zhaoyang Xu, Shen Ma, Jiarui Lu, Xiang Kong, Aonan Zhang, Dian Ang Yap, Yizhe zhang, Karsten Ahnert, Vik Kamath, Mathias Berglund, Dominic Walsh, Tobias Gindele, Juergen Wiest, Zhengfeng Lai, Xiaoming Wang, Jiulong Shan, Meng Cao, Ruoming Pang, Zirui Wang
MMAU: A Holistic Benchmark of Agent Capabilities Across Diverse Domains. CoRR (2024)
Jiarui Lu, Zuobai Zhang, Bozitao Zhong, Chence Shi, Jian Tang
Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations. CoRR (2024)
Yilun Zhu, Joel Ruben Antony Moniz, Shruti Bhargava, Jiarui Lu, Dhivya Piraviperumal, Site Li, Yuan Zhang, Hong Yu, Bo-Hsiang Tseng
Can Large Language Models Understand Context? CoRR (2024)
Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan, Aurélie C. Lozano, Payel Das, Jian Tang
Structure-Informed Protein Language Model. CoRR (2024)
Shengchao Liu, Chengpeng Wang, Jiarui Lu, Weili Nie, Hanchen Wang, Zhuoxinran Li, Bolei Zhou, Jian Tang
Unsupervised Discovery of Steerable Factors When Graph Deep Generative Models Are Entangled. CoRR (2024)
Longzheng Wang, Xiaohan Xu, Lei Zhang, Jiarui Lu, Yongxiu Xu, Hongbo Xu, Chuang Zhang
MMIDR: Teaching Large Language Model to Interpret Multimodal Misinformation via Knowledge Distillation. CoRR (2024)
Yilun Zhu, Joel Ruben Antony Moniz, Shruti Bhargava, Jiarui Lu, Dhivya Piraviperumal, Site Li, Yuan Zhang, Hong Yu, Bo-Hsiang Tseng
Can Large Language Models Understand Context? EACL (Findings) (2024)
Shengchao Liu, Weili Nie, Chengpeng Wang, Jiarui Lu, Zhuoran Qiao, Ling Liu, Jian Tang, Chaowei Xiao, Animashree Anandkumar
Multi-modal molecule structure-text model for text-based retrieval and editing. Nat. Mac. Intell. 5 (12) (2023)
Leon Liyang Zhang, Jiarui Lu, Joel Ruben Antony Moniz, Aditya Kulkarni, Dhivya Piraviperumal, Tien Dung Tran, Nick Tzou, Hong Yu
STEER: Semantic Turn Extension-Expansion Recognition for Voice Assistants. EMNLP (Industry Track) (2023)
Cecilia Aas, Hisham Abdelsalam, Irina Belousova, Shruti Bhargava, Jianpeng Cheng, Robert Daland, Joris Driesen, Federico Flego, Tristan Guigue, Anders Johannsen, Partha Lal, Jiarui Lu, Joel Ruben Antony Moniz, Nathan Perkins, Dhivya Piraviperumal, Stephen Pulman, Diarmuid Ó Séaghdha, David Q. Sun, John Torr, Marco Del Vecchio, Jay Wacker, Jason D. Williams, Hong Yu
Intelligent Assistant Language Understanding On Device. CoRR (2023)
Yizhe Zhang, Jiarui Lu, Navdeep Jaitly
The Entity-Deduction Arena: A playground for probing the conversational reasoning and planning capabilities of LLMs. CoRR (2023)
Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang
Protein Sequence and Structure Co-Design with Equivariant Translation. ICLR (2023)
Jiarui Lu, Bo-Hsiang Tseng, Joel Ruben Antony Moniz, Site Li, Xueyun Zhu, Hong Yu, Murat Akbacak
5IDER: Unified Query Rewriting for Steering, Intent Carryover, Disfluencies, Entity Carryover and Repair. CoRR (2023)
Halim Cagri Ates, Shruti Bhargava, Site Li, Jiarui Lu, Siddhardha Maddula, Joel Ruben Antony Moniz, Anil Kumar Nalamalapu, Roman Hoang Nguyen, Melis Özyildirim, Alkesh Patel, Dhivya Piraviperumal, Vincent Renkens, Ankit Samal, Thy Tran, Bo-Hsiang Tseng, Hong Yu, Yuan Zhang, Rong Zou
MARRS: Multimodal Reference Resolution System. CoRR (2023)
Jiarui Lu, Bozitao Zhong, Jian Tang
Score-based Enhanced Sampling for Protein Molecular Dynamics. CoRR (2023)
Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michal Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Ioannis Koutis, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W. Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters
Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets. CoRR (2023)
Shengchao Liu, Yutao Zhu, Jiarui Lu, Zhao Xu, Weili Nie, Anthony Gitter, Chaowei Xiao, Jian Tang, Hongyu Guo, Anima Anandkumar
A Text-guided Protein Design Framework. CoRR (2023)
Leon Liyang Zhang, Jiarui Lu, Joel Ruben Antony Moniz, Aditya Kulkarni, Dhivya Piraviperumal, Tien Dung Tran, Nicholas Tzou, Hong Yu
STEER: Semantic Turn Extension-Expansion Recognition for Voice Assistants. CoRR (2023)
Jiarui Lu, Bo-Hsiang Tseng, Joel Ruben Antony Moniz, Site Li, Xueyun Zhu, Hong Yu, Murat Akbacak
5IDER: Unified Query Rewriting for Steering, Intent Carryover, Disfluencies, Entity Carryover and Repair. INTERSPEECH (2023)
Zewei Ji, Runhan Shi, Jiarui Lu, Fang Li, Yang Yang
ReLMole: Molecular Representation Learning Based on Two-Level Graph Similarities. J. Chem. Inf. Model. 62 (22) (2022)
Shengchao Liu, Weili Nie, Chengpeng Wang, Jiarui Lu, Zhuoran Qiao, Ling Liu, Jian Tang, Chaowei Xiao, Anima Anandkumar
Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editing. CoRR (2022)
Minghao Xu, Zuobai Zhang, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Chang Ma, Runcheng Liu, Jian Tang
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding. NeurIPS (2022)
Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang
Protein Sequence and Structure Co-Design with Equivariant Translation. CoRR (2022)
Zhaocheng Zhu, Chence Shi, Zuobai Zhang, Shengchao Liu, Minghao Xu, Xinyu Yuan, Yangtian Zhang, Junkun Chen, Huiyu Cai, Jiarui Lu, Chang Ma, Runcheng Liu, Louis-Pascal A. C. Xhonneux, Meng Qu, Jian Tang
TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery. CoRR (2022)
Minghao Xu, Zuobai Zhang, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Chang Ma, Runcheng Liu, Jian Tang
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding. CoRR (2022)
Bo-Hsiang Tseng, Shruti Bhargava, Jiarui Lu, Joel Ruben Antony Moniz, Dhivya Piraviperumal, Lin Li, Hong Yu
CREAD: Combined Resolution of Ellipses and Anaphora in Dialogues. NAACL-HLT (2021)
Dawei Liu, Jiarui Lu
Dynamic Characteristics of Two-Mass Inertial Pipeline Robot Driven by Noncircular Gears. ICIRA (4) (2021)
Michael B. Sohn, Jiarui Lu, Hongzhe Li
A compositional mediation model for a binary outcome: Application to microbiome studies. Bioinform. 38 (1) (2021)
Bo-Hsiang Tseng, Shruti Bhargava, Jiarui Lu, Joel Ruben Antony Moniz, Dhivya Piraviperumal, Lin Li, Hong Yu
CREAD: Combined Resolution of Ellipses and Anaphora in Dialogues. CoRR (2021)
Zhimiao Yu, Jiarui Lu, Yuan Jin, Yang Yang
KenDTI: An Ensemble Model for Predicting Drug-Target Interaction by Integrating Multi-Source Information. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Changyong Yu, Xin He, Haitao Ma, Xin Qi, Jiarui Lu, Yuhai Zhao
S-DenseNet: A DenseNet Compression Model Based on Convolution Grouping Strategy Using Skyline Method. IEEE Access 7 (2019)