Igor N. Berezovsky

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 9

Top Topics

Genomic Sequences

Hierarchical Organization

Protein Families

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Frontiers Bioinform.

Publications

Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design. Nucleic Acids Res. 51 (D1) (2023)
Melvin Yin, Alexander Goncearenco, Igor N. Berezovsky
Deriving and Using Descriptors of Elementary Functions in Rational Protein Design. Frontiers Bioinform. 1 (2021)
Zhen Wah Tan, Enrico Guarnera, Wei-Ven Tee, Igor N. Berezovsky
AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky
AlloMAPS: allosteric mutation analysis and polymorphism of signaling database. Nucleic Acids Res. 47 (Database-Issue) (2019)
Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response. PLoS Comput. Biol. 14 (6) (2018)
Zhen Wah Tan, Enrico Guarnera, Igor N. Berezovsky
Exploring chromatin hierarchical organization via Markov State Modelling. PLoS Comput. Biol. 14 (12) (2018)
Enrico Guarnera, Zhen Wah Tan, Zejun Zheng, Igor N. Berezovsky
AlloSigMA: allosteric signaling and mutation analysis server. Bioinform. 33 (24) (2017)
Zejun Zheng, Alexander Goncearenco, Igor N. Berezovsky
Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions. Nucleic Acids Res. 44 (Database-Issue) (2016)
Enrico Guarnera, Igor N. Berezovsky
Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication. PLoS Comput. Biol. 12 (3) (2016)
Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky
SPACER: server for predicting allosteric communication and effects of regulation. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Alexander Goncearenco, Igor N. Berezovsky
Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins. Bioinform. 27 (17) (2011)
Simon Mitternacht, Igor N. Berezovsky
Binding Leverage as a Molecular Basis for Allosteric Regulation. PLoS Comput. Biol. 7 (9) (2011)
Simon Mitternacht, Igor N. Berezovsky
Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication. PLoS Comput. Biol. 7 (12) (2011)
Alexander Goncearenco, Igor N. Berezovsky
Prototypes of elementary functional loops unravel evolutionary connections between protein functions. Bioinform. 26 (18) (2010)
Grzegorz Koczyk, Igor N. Berezovsky
Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich
Protein and DNA Sequence Determinants of Thermophilic Adaptation. PLoS Comput. Biol. 3 (1) (2007)
Igor N. Berezovsky, Konstantin B. Zeldovich, Eugene I. Shakhnovich
Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins. PLoS Comput. Biol. 3 (3) (2007)
Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber
Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. BMC Bioinform. 7 (2006)
Igor N. Berezovsky, William W. Chen, Paul J. Choi, Eugene I. Shakhnovich
Entropic Stabilization of Proteins and Its Proteomic Consequences. PLoS Comput. Biol. 1 (4) (2005)
Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan
Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure. J. Comput. Biol. 7 (1-2) (2000)