Huaiqiu Zhu

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 14

Top Topics

Comprehensive Analysis

Computer Simulation

Reference Genome

Top Venues

Publications

Peter X. Geng, Jiaheng Hou, Huaiqiu Zhu
Computer Simulation of Gene Knockout in Bacteria Accelerated by AI. CISP-BMEI (2023)
Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang, Huaiqiu Zhu
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. Bioinform. 38 (2) (2022)
Xiaoqing Jiang, Congmin Xu, Qian Guo, Huaiqiu Zhu
AI-aided Data Mining in Gut Microbiome: The Road to Precision Medicine. CISP-BMEI (2021)
Congmin Xu, Man Zhou, Zhongjie Xie, Mo Li, Xi Zhu, Huaiqiu Zhu
LightCUD: a program for diagnosing IBD based on human gut microbiome data. BioData Min. 14 (1) (2021)
Cheng Yang, Man Zhou, Haoling Xie, Huaiqiu Zhu
LncADeep performance on full-length transcripts. Nat. Mach. Intell. 3 (3) (2021)
Zhencheng Fang, Jie Tan, Shufang Wu, Mo Li, Chunhui Wang, Yongchu Liu, Huaiqiu Zhu
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning. Bioinform. 36 (10) (2020)
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu
An Error Correction Method of Nanopore Sequencing Data Using Deep Learning. CISP-BMEI (2020)
Xiaoqing Jiang, Xin Li, Longshu Yang, Chunhong Liu, Qi Wang, Weilai Chi, Huaiqiu Zhu
How Microbes Shape Their Communities? A Microbial Community Model Based on Functional Genes. Genom. Proteom. Bioinform. 17 (1) (2019)
Li Qu, Huaiqiu Zhu, May D. Wang
Micro-Inversions In Human Cancer Genomes. EMBC (2018)
Chuan He, Huaiqiu Zhu
A Novel Compression Algorithm for High-Throughput DNA Sequence Based on Huffman Coding Method. CISP-BMEI (2018)
Cheng Yang, Longshu Yang, Man Zhou, Haoling Xie, Chengjiu Zhang, May D. Wang, Huaiqiu Zhu
LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning. Bioinform. 34 (22) (2018)
Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics. BMC Bioinform. 18 (1) (2017)
Feifei He, Yang Li, Yu-Hang Tang, Jian Ma, Huaiqiu Zhu
Identifying micro-inversions using high-throughput sequencing reads. BMC Genom. 17 (S-1) (2016)
Xiaopeng Song, Xiao Hu, Shuqin Zhou, Weiguo Liu, Yijun Liu, Huaiqiu Zhu, Jia-Hong Gao
Examining the neural correlates of depressive and motor symptoms in Parkinson's disease using Frequency Component Analysis (FCA). Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2016)
Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu
InteMAP: Integrated metagenomic assembly pipeline for NGS short reads. BMC Bioinform. 16 (2015)
Yongchu Liu, Jiangtao Guo, Gang-Qing Hu, Huaiqiu Zhu
Gene prediction in metagenomic fragments based on the SVM algorithm. BMC Bioinform. 14 (S-5) (2013)
Binbin Lai, Ruogu Ding, Yang Li, Liping Duan, Huaiqiu Zhu
metagenomic assembly program for shotgun DNA reads. Bioinform. 28 (11) (2012)
Binbin Lai, Ruogu Ding, Huaiqiu Zhu
A de novo assembly method for metagenomic DNA reads with mate pairs. BMEI (2011)
Yongchu Liu, Jiangtao Guo, Huaiqiu Zhu
Gene prediction in metagenomic fragments based on the SVM algorithm. BMEI (2011)
Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, Huaiqiu Zhu, Xiang Gao
A mutation degree model for the identification of transcriptional regulatory elements. BMC Bioinform. 12 (2011)
Gang-Qing Hu, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She
Prediction of translation initiation site for microbial genomes with TriTISA. Bioinform. 25 (1) (2009)
Gang-Qing Hu, Jiangtao Guo, Yongchu Liu, Huaiqiu Zhu
MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction. Bioinform. 25 (14) (2009)
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She
A dynamic Bayesian network approach to protein secondary structure prediction. BMC Bioinform. 9 (2008)
Gang-Qing Hu, Xiaobin Zheng, Lining Ju, Huaiqiu Zhu, Zhen-Su She
Computational evaluation of TIS annotation for prokaryotic genomes. BMC Bioinform. 9 (2008)
Gang-Qing Hu, Xiaobin Zheng, Yi-Fan Yang, Philippe Ortet, Zhen-Su She, Huaiqiu Zhu
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes. Nucleic Acids Res. 36 (Database-Issue) (2008)
Zhu Yang, John D. O'Brien, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She
Tree and rate estimation by local evaluation of heterochronous nucleotide data. Bioinform. 23 (2) (2007)
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinform. 8 (2007)
Zheng-Qing Ouyang, Huaiqiu Zhu, Jin Wang, Zhen-Su She
Multivariate Entropy Distance Method for Prokaryotic Gene Identification. J. Bioinform. Comput. Biol. 2 (2) (2004)
Wen Xue, Jin Wang, Zhirong Shen, Huaiqiu Zhu
Enrichment of transcriptional regulatory sites in non-coding genomic region. Bioinform. 20 (4) (2004)
Huaiqiu Zhu, Gang-Qing Hu, Zheng-Qing Ouyang, Jin Wang, Zhen-Su She
Accuracy improvement for identifying translation initiation sites in microbial genomes. Bioinform. 20 (18) (2004)