Hiroyuki Kurata

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 14

Top Topics

Protein Interaction

Complex Biological Systems

Top Venues

Briefings Bioinform.

J. Comput. Aided Mol. Des.

Publications

Md. Harun-Or-Roshid, Kazuhiro Maeda, Le Thi Phan, Balachandran Manavalan, Hiroyuki Kurata
Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach. Comput. Biol. Medicine 169 (2024)
Sho Tsukiyama, Md. Mehedi Hasan, Hong-Wen Deng, Hiroyuki Kurata
BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches. Briefings Bioinform. 23 (2) (2022)
Hiroyuki Kurata, Sho Tsukiyama, Balachandran Manavalan
iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model. Briefings Bioinform. 23 (4) (2022)
Kazuhiro Maeda, Aoi Hatae, Yukie Sakai, Fred C. Boogerd, Hiroyuki Kurata
MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling. BMC Bioinform. 23 (1) (2022)
Md. Mehedi Hasan, Shaherin Basith, Mst. Shamima Khatun, Gwang Lee, Balachandran Manavalan, Hiroyuki Kurata
Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform. 22 (3) (2021)
Michihiro Hara, Takao Umeda, Hiroyuki Kurata
Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an Interlayer. Sensors 21 (11) (2021)
Sho Tsukiyama, Md. Mehedi Hasan, Satoshi Fujii, Hiroyuki Kurata
LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vec. Briefings Bioinform. 22 (6) (2021)
Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata
NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning. Briefings Bioinform. 22 (6) (2021)
Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hiroyuki Kurata
IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations. J. Comput. Aided Mol. Des. 35 (3) (2021)
Md. Mehedi Hasan, Mst. Shamima Khatun, Hiroyuki Kurata
iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features. Genom. Proteom. Bioinform. 18 (5) (2020)
Mst. Shamima Khatun, Md. Mehedi Hasan, Watshara Shoombuatong, Hiroyuki Kurata
ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations. J. Comput. Aided Mol. Des. 34 (12) (2020)
A. B. M. Shamim Ul Hasan, Hiroyuki Kurata, Sebastian Pechmann
Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation. BMC Bioinform. 20 (1) (2019)
Mst. Shamima Khatun, Md. Mehedi Hasan, Md. Nurul Haque Mollah, Hiroyuki Kurata
SIPMA: A Systematic Identification of Protein-Protein Interactions in Zea mays Using Autocorrelation Features in a Machine-Learning Framework. BIBE (2018)
Md. Mehedi Hasan, Hiroyuki Kurata
iLMS, Computational Identification of Lysine-Malonylation Sites by Combining Multiple Sequence Features. BIBE (2018)
Kazuhiro Maeda, Hiroyuki Kurata
Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity. BMC Syst. Biol. 8 (S-5) (2014)
Hiroyuki Kurata, Kazuhiro Maeda, Toshikazu Onaka, Takenori Takata
BioFNet: biological functional network database for analysis and synthesis of biological systems. Briefings Bioinform. 15 (5) (2014)
Shuhei Yoshida, Takaaki Matsubara, Hiroyuki Kurata, Shuma Horiuchi, Manabu Yamamoto
Multi-Dimensional Shift Multiplexing Technique with Spherical Reference Waves. IEICE Trans. Electron. (12) (2013)
Koichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata
Ammonia Assimilation System. Artif. Life 18 (1) (2012)
Kentaro Inoue, Kazuhiro Maeda, Yuki Kato, Shinpei Tonami, Shogo Takagi, Hiroyuki Kurata
CADLIVE optimizer: web-based parameter estimation for dynamic models. Source Code Biol. Medicine 7 (2012)
Quanyu Zhao, Hiroyuki Kurata
Genetic modification of flux for flux prediction of mutants. Bioinform. 25 (13) (2009)
Hiroyuki Kurata, Quanyu Zhao, Ryuichi Okuda, Kazuyuki Shimizu
Integration of enzyme activities into metabolic flux distributions by elementary mode analysis. BMC Syst. Biol. 1 (2007)
Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C. Doyle, Irina Grigorova, Carol A. Gross, Mustafa Khammash
Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System. PLoS Comput. Biol. 2 (7) (2006)
Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
Effective and Fast Optimization for a Dynamic Model of the Drosophila Circadian Oscillator. SMC (2006)
Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
Survival ratio GA for two-evaluation problem in parameter tuning of heat shock response in E. coli. SMC (2005)
Tanaka Shin, Hiroyuki Kurata, Takeshi Ohashi
Reverse Engineering for a Dynamic Model of the Drosophila Circadia Oscillator. CIMCA/IAWTIC (2005)
Weijiang Li, Hiroyuki Kurata
A grid layout algorithm for automatic drawing of biochemical networks. Bioinform. 21 (9) (2005)
Hana El-Samad, Mustafa Khammash, Hiroyuki Kurata, John Doyle
Robustness analysis of the heat shock response in E. coli. ACC (2002)
Hiroyuki Kurata, Hana El-Samad, Tau-Mu Yi, Mustafa Khammash, John Doyle
Feedback regulation of the heat shock response in E. coli. CDC (2001)