Watshara Shoombuatong

Publication Activity (10 Years)

Years Active: 2011-2025
Publications (10 Years): 28

Top Topics

Feature Representation

Ensemble Learning

Binding Peptides

Hepatitis C Virus

Top Venues

Comput. Biol. Medicine

J. Comput. Aided Mol. Des.

Publications

Phasit Charoenkwan, Nalini Schaduangrat, Le Thi Phan, Balachandran Manavalan, Watshara Shoombuatong
M3S-ALG: Improved and robust prediction of allergenicity of chemical compounds by using a novel multi-step stacking strategy. Future Gener. Comput. Syst. 162 (2025)
Fang Ge, Muhammad Arif, Zihao Yan, Hanin H. Alahmadi, Apilak Worachartcheewan, Dong-Jun Yu, Watshara Shoombuatong
MMPatho: Leveraging Multilevel Consensus and Evolutionary Information for Enhanced Missense Mutation Pathogenic Prediction. J. Chem. Inf. Model. 63 (22) (2023)
Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Changmin Oh, Balachandran Manavalan, Watshara Shoombuatong
PSRQSP: An effective approach for the interpretable prediction of quorum sensing peptide using propensity score representation learning. Comput. Biol. Medicine 158 (2023)
Phasit Charoenkwan, Nalini Schaduangrat, Watshara Shoombuatong
StackTTCA: a stacking ensemble learning-based framework for accurate and high-throughput identification of tumor T cell antigens. BMC Bioinform. 24 (1) (2023)
Nalini Schaduangrat, Nuttapat Anuwongcharoen, Phasit Charoenkwan, Watshara Shoombuatong
DeepAR: a novel deep learning-based hybrid framework for the interpretable prediction of androgen receptor antagonists. J. Cheminformatics 15 (1) (2023)
Phasit Charoenkwan, Chonlatip Pipattanaboon, Chanin Nantasenamat, Md Mehedi Hasan, Mohammad Ali Moni, Pietro Lio', Watshara Shoombuatong
PSRTTCA: A new approach for improving the prediction and characterization of tumor T cell antigens using propensity score representation learning. Comput. Biol. Medicine 152 (2023)
Phasit Charoenkwan, Sasikarn Kongsompong, Nalini Schaduangrat, Pramote Chumnanpuen, Watshara Shoombuatong
TIPred: a novel stacked ensemble approach for the accelerated discovery of tyrosinase inhibitory peptides. BMC Bioinform. 24 (1) (2023)
Phasit Charoenkwan, Nalini Schaduangrat, Mohammad Ali Moni, Pietro Lio', Balachandran Manavalan, Watshara Shoombuatong
SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins. Comput. Biol. Medicine 146 (2022)
Md. Faruk Hosen, S. M. Hasan Mahmud, Kawsar Ahmed, Wenyu Chen, Mohammad Ali Moni, Hong-Wen Deng, Watshara Shoombuatong, Md. Mehedi Hasan
DeepDNAbP: A deep learning-based hybrid approach to improve the identification of deoxyribonucleic acid-binding proteins. Comput. Biol. Medicine 145 (2022)
Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Watshara Shoombuatong
Improved prediction and characterization of blood-brain barrier penetrating peptides using estimated propensity scores of dipeptides. J. Comput. Aided Mol. Des. 36 (11) (2022)
Phasit Charoenkwan, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Balachandran Manavalan, Watshara Shoombuatong
NEPTUNE: A novel computational approach for accurate and large-scale identification of tumor homing peptides. Comput. Biol. Medicine 148 (2022)
Phasit Charoenkwan, Wararat Chiangjong, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides. Briefings Bioinform. 22 (6) (2021)
Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides. Bioinform. 37 (17) (2021)
Utpala Nanda Chowdhury, Md. Omar Faruqe, Md Mehedy, Shamim Ahmad, M. Babul Islam, Watshara Shoombuatong, A. K. M. Azad, Mohammad Ali Moni
Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection. Comput. Biol. Medicine 138 (2021)
Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata
NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning. Briefings Bioinform. 22 (6) (2021)
Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hiroyuki Kurata
IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations. J. Comput. Aided Mol. Des. 35 (3) (2021)
Aijaz Ahmad Malik, Warot Chotpatiwetchkul, Chuleeporn Phanus-umporn, Chanin Nantasenamat, Phasit Charoenkwan, Watshara Shoombuatong
StackHCV: a web-based integrative machine-learning framework for large-scale identification of hepatitis C virus NS5B inhibitors. J. Comput. Aided Mol. Des. 35 (10) (2021)
Aijaz Ahmad Malik, Chuleeporn Phanus-umporn, Nalini Schaduangrat, Watshara Shoombuatong, Chartchalerm Isarankura-Na-Ayudhya, Chanin Nantasenamat
HCVpred : A web server for predicting the bioactivity of hepatitis C virus NS5B inhibitors. J. Comput. Chem. 41 (20) (2020)
Md. Mehedi Hasan, Nalini Schaduangrat, Shaherin Basith, Gwang Lee, Watshara Shoombuatong, Balachandran Manavalan
HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation. Bioinform. 36 (11) (2020)
Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Watshara Shoombuatong
Meta-iPVP: a sequence-based meta-predictor for improving the prediction of phage virion proteins using effective feature representation. J. Comput. Aided Mol. Des. 34 (10) (2020)
Mst. Shamima Khatun, Md. Mehedi Hasan, Watshara Shoombuatong, Hiroyuki Kurata
ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations. J. Comput. Aided Mol. Des. 34 (12) (2020)
Phasit Charoenkwan, Janchai Yana, Chanin Nantasenamat, Md. Mehedi Hasan, Watshara Shoombuatong
iUmami-SCM: A Novel Sequence-Based Predictor for Prediction and Analysis of Umami Peptides Using a Scoring Card Method with Propensity Scores of Dipeptides. J. Chem. Inf. Model. 60 (12) (2020)
Sayamon Hongjaisee, Chanin Nantasenamat, Tanawan Samleerat Carraway, Watshara Shoombuatong
HIVCoR: A sequence-based tool for predicting HIV-1 CRF01_AE coreceptor usage. Comput. Biol. Chem. 80 (2019)
Watshara Shoombuatong, Nalini Schaduangrat, Reny Pratiwi, Chanin Nantasenamat
THPep: A machine learning-based approach for predicting tumor homing peptides. Comput. Biol. Chem. 80 (2019)
V. Laengsri, Watshara Shoombuatong, W. Adirojananon, C. Nantasenamart, Virapong Prachayasittikul, P. Nuchnoi
ThalPred: a web-based prediction tool for discriminating thalassemia trait and iron deficiency anemia. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
V. Laengsri, Watshara Shoombuatong, W. Adirojananon, Chanin Nantasenamat, Virapong Prachayasittikul, P. Nuchnoi
Correction to: ThalPred: a web-based prediction tool for discriminating thalassemia trait and ron deficiency anemia. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Tanchanok Wisitponchai, Watshara Shoombuatong, Vannajan Sanghiran Lee, Kuntida Kitidee, Chatchai Tayapiwatana
AnkPlex: algorithmic structure for refinement of near-native ankyrin-protein docking. BMC Bioinform. 18 (1) (2017)
Saw Simeon, Watshara Shoombuatong, Nuttapat Anuwongcharoen, Likit Preeyanon, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
osFP: a web server for predicting the oligomeric states of fluorescent proteins. J. Cheminformatics 8 (1) (2016)
Watshara Shoombuatong, Panuwat Mekha, Jeerayut Chaijaruwanich
Sequence based human leukocyte antigen gene prediction using informative physicochemical properties. Int. J. Data Min. Bioinform. 13 (3) (2015)
Watshara Shoombuatong, Hui-Ling Huang, Jeerayut Chaijaruwanich, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho
Predicting protein crystallization using a simple scoring card method. CIBCB (2013)
Watshara Shoombuatong, Sayamon Hongjaisee, Francis Barin, Jeerayut Chaijaruwanich, Tanawan Samleerat
HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees. Comput. Biol. Medicine 42 (9) (2012)
Watshara Shoombuatong, Patrinee Traisathit, Sukon Prasitwattanaseree, Chatchai Tayapiwatana, Robert W. Cutler, Jeerayut Chaijaruwanich
Prediction of the disulphide bonding state of cysteines in proteins using Conditional Random Fields. Int. J. Data Min. Bioinform. 5 (4) (2011)