Giulia Paciello

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 5

Top Topics

Multivariate Time Series

Colorectal Cancer

Sequence Alignment

Top Venues

Publications

Francesco Spinnato, Riccardo Guidotti, Mirco Nanni, Daniele Maccagnola, Giulia Paciello, Antonio Bencini Farina
Explaining Crash Predictions on Multivariate Time Series Data. DS (2022)
Alejandra Cervera, Heidi Rausio, Tiia Kähkönen, Noora Andersson, Gabriele Partel, Ville Rantanen, Giulia Paciello, Elisa Ficarra, Johanna Hynninen, Sakari Hietanen, Olli Carpén, Rainer Lehtonen, Sampsa Hautaniemi, Kaisa Huhtinen
FUNGI: FUsioN Gene Integration toolset. Bioinform. 37 (19) (2021)
Orazio M. Scicolone, Giulia Paciello, Elisa Ficarra
geneEx - A Novel Tool to Assess Differential Expression from Gene and Exon Sequencing Data. BIOINFORMATICS (2018)
Giulia Paciello, Elisa Ficarra
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. BMC Bioinform. 18 (1) (2017)
Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra
isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. BMC Bioinform. 17 (2016)
Gianvito Urgese, Giulia Paciello, Claudio Isella, Enzo Medico, Enrico Macii, Elisa Ficarra, Andrea Acquaviva
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. IWBBIO (2014)
Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. IWBBIO (2014)
Giulia Paciello, Andrea Acquaviva, Consalvo Petti, Claudio Isella, Enzo Medico, Elisa Ficarra
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. BIOINFORMATICS (2014)
Giulia Paciello, Elisa Ficarra, Alberto Zamò, Chiara Pighi, Carmelo Foti, Francesco Abate, Enrico Macii, Andrea Acquaviva
A Novel Pipeline for V(D)J Junction Identification using RNA-Seq Paired-end Reads. BIOINFORMATICS (2013)
Francesco Abate, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Enrico Macii
A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data. BIOINFORMATICS (2012)
Francesco Abate, Andrea Acquaviva, Giulia Paciello, Carmelo Foti, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Ilaria Iacobucci, Simona Soverini, Giovanni Martinelli, Enrico Macii
Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model. Bioinform. 28 (16) (2012)
Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, M. A. Deriu, A. Grosso, Enrico Macii
Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction. BIOINFORMATICS (2011)
Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Giulia Paciello, Enrico Macii, Alberto Ferrarini, Massimo Delledonne, Simona Soverini, Giovanni Martinelli
A novel framework for chimeric transcript detection based on accurate gene fusion model. BIBM Workshops (2011)