Gastone C. Castellani

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 22

Top Topics

Belief Propagation

Assessment Tool

Stochastic Process

Top Venues

Briefings Bioinform.

J. Open Source Softw.

Publications

Filippo Piccinini, Marcella Tazzari, Maria Maddalena Tumedei, Mariachiara Stellato, Daniel Remondini, Enrico Giampieri, Giovanni Martinelli, Gastone C. Castellani, Antonella Carbonaro
Data Science for Health Image Alignment: A User-Friendly Open-Source ImageJ/Fiji Plugin for Aligning Multimodality/Immunohistochemistry/Immunofluorescence 2D Microscopy Images. Sensors 24 (2) (2024)
Nico Curti, Yuri Merli, Corrado Zengarini, Michela Starace, Luca Rapparini, Emanuela Marcelli, Gianluca Carlini, Daniele Buschi, Gastone C. Castellani, Bianca Maria Piraccini, Tommaso Bianchi, Enrico Giampieri
Automated Prediction of Photographic Wound Assessment Tool in Chronic Wound Images. J. Medical Syst. 48 (1) (2024)
Daniele Dall'Olio, Eric Sträng, Amin T. Turki, Jesse M. Tettero, Martje Barbus, Renate Schulze-Rath, Javier Martinez Elicegui, Tommaso Matteuzzi, Alessandra Merlotti, Luciana Carota, Claudia Sala, Matteo G. Della Porta, Enrico Giampieri, Jesús María Hernández-Rivas, Lars Bullinger, Gastone C. Castellani
Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology. PLoS Comput. Biol. 20 (2) (2024)
Claudia Sala, Pietro Di Lena, Danielle Fernandes Durso, Ìtalo Faria do Valle, Maria Giulia Bacalini, Daniele Dall'Olio, Claudio Franceschi, Gastone C. Castellani, Paolo Garagnani, Christine Nardini
Where are we in the implementation of tissue-specific epigenetic clocks? Frontiers Bioinform. 4 (2024)
Stefano Polizzi, Tommaso Marzi, Tommaso Matteuzzi, Gastone C. Castellani, Armando Bazzani
Random Walk Approximation for Stochastic Processes on Graphs. Entropy 25 (3) (2023)
Lorenzo Dall'Olio, Maddalena Bolognesi, Simone Borghesi, Giorgio Cattoretti, Gastone C. Castellani
BRAQUE: Bayesian Reduction for Amplified Quantization in UMAP Embedding. Entropy 25 (2) (2023)
Lorenzo Squadrani, Nico Curti, Enrico Giampieri, Daniel Remondini, Brian S. Blais, Gastone C. Castellani
Effectiveness of Biologically Inspired Neural Network Models in Learning and Patterns Memorization. Entropy 24 (5) (2022)
Riccardo Biondi, Nico Curti, Enrico Giampieri, Gastone C. Castellani
COVID-19 Lung Segmentation. J. Open Source Softw. 6 (65) (2021)
Ettore Mosca, Matteo Bersanelli, Tommaso Matteuzzi, Noemi Di Nanni, Gastone C. Castellani, Luciano Milanesi, Daniel Remondini
Characterization and comparison of gene-centered human interactomes. Briefings Bioinform. 22 (6) (2021)
Daniele Dall'Olio, Nico Curti, Eugenio Fonzi, Claudia Sala, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri
Impact of concurrency on the performance of a whole exome sequencing pipeline. BMC Bioinform. 22 (1) (2021)
Daniele Dall'Olio, Nico Curti, Eugenio Fonzi, Claudia Sala, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri
Correction to: Impact of concurrency on the performance of a whole exome sequencing pipeline. BMC Bioinform. 22 (1) (2021)
Gastone C. Castellani, Leon N. Cooper, Luciana Renata de Oliveira, Brian S. Blais
Energy Consumption and Entropy Production in a Stochastic Formulation of BCM Learning. J. Comput. Biol. 28 (3) (2021)
Carlo Mengucci, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri
WISDoM: Characterizing Neurological Time Series With the Wishart Distribution. Frontiers Neuroinformatics 14 (2020)
Nico Curti, Daniele Dall'Olio, Daniel Remondini, Gastone C. Castellani, Enrico Giampieri
rFBP: Replicated Focusing Belief Propagation algorithm. J. Open Source Softw. 5 (54) (2020)
Laura Caramazza, Annalisa De Angelis, Daniel Remondini, Gastone C. Castellani, Micaela Liberti, Francesca Apollonio, Isabella Zironi
Galvanotactic Phenomenon Induced by Non-Contact Electrostatic Field: Investigation in a Scratch Assay. EMBC (2020)
A. Merlotti, Ìtalo Faria do Valle, Gastone C. Castellani, Daniel Remondini
Statistical modelling of CG interdistance across multiple organisms. BMC Bioinform. (10) (2018)
Nico Curti, Enrico Giampieri, Andrea Ferraro, Maria Cristina Vistoli, Elisabetta Ronchieri, Daniele Cesini, Barbara Martelli, Cristina Duma Doina, Gastone C. Castellani
Cross-Environment Comparison of a Bioinformatics Pipeline: Perspectives for Hybrid Computations. Euro-Par Workshops (2018)
Claudia Sala, Silvia Vitali, Enrico Giampieri, Ìtalo Faria do Valle, Daniel Remondini, Paolo Garagnani, Matteo Bersanelli, Ettore Mosca, Luciano Milanesi, Gastone C. Castellani
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data. BMC Bioinform. 17 (S-2) (2016)
Carla A. R. S. Fontoura, Gastone C. Castellani, José C. M. Mombach
The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data. Comput. Biol. Medicine 78 (2016)
Gastone C. Castellani, Giulia Menichetti, Paolo Garagnani, Maria Giulia Bacalini, Chiara Pirazzini, Claudio Franceschi, Sebastiano Collino, Claudia Sala, Daniel Remondini, Enrico Giampieri, Ettore Mosca, Matteo Bersanelli, Silvia Vitali, Ìtalo Faria do Valle, Pietro Liò, Luciano Milanesi
Systems medicine of inflammaging. Briefings Bioinform. 17 (3) (2016)
Ìtalo Faria do Valle, Enrico Giampieri, Giorgia Simonetti, Antonella Padella, Marco Manfrini, Anna Ferrari, Cristina Papayannidis, Isabella Zironi, Marianna Garonzi, Simona Bernardi, Massimo Delledonne, Giovanni Martinelli, Daniel Remondini, Gastone C. Castellani
Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. BMC Bioinform. 17 (S-12) (2016)
Matteo Bersanelli, Ettore Mosca, Daniel Remondini, Enrico Giampieri, Claudia Sala, Gastone C. Castellani, Luciano Milanesi
Methods for the integration of multi-omics data: mathematical aspects. BMC Bioinform. 17 (S-2) (2016)
Luciano Milanesi, Paolo Romano, Gastone C. Castellani, Daniel Remondini, Pietro Liò
Trends in modeling Biomedical Complex Systems. BMC Bioinform. 10 (S-12) (2009)
Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M. Sedivy, Leon N. Cooper, Ettore Verondini, Luciano Milanesi, Gastone C. Castellani
Reconstructing networks of pathways via significance analysis of their intersections. BMC Bioinform. 9 (S-4) (2008)
Nicola Neretti, Daniel Remondini, Marc Tatar, John M. Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastone C. Castellani
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. BMC Bioinform. 8 (S-1) (2007)
Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani
Networks from Gene Expression Time Series: Characterization of Correlation Patterns. Int. J. Bifurc. Chaos 17 (7) (2007)
Daniel Remondini, Paolo Tieri, Silvana Valensin, Ettore Verondini, Claudio Franceschi, F. Bersani, Gastone C. Castellani
A General Learning Rule for Network Modeling of Neuroimmune Interactome. WIRN/NAIS (2005)
Paolo Tieri, Silvana Valensin, Vito Latora, Gastone C. Castellani, Massimo Marchiori, Daniel Remondini, Claudio Franceschi
Quantifying the relevance of different mediators in the human immune cell network. Bioinform. 21 (8) (2005)
Paolo Tieri, Silvana Valensin, Claudio Franceschi, C. Morandi, Gastone C. Castellani
Memory and Selectivity in Evolving Scale-Free Immune Networks. ICARIS (2003)
Armando Bazzani, Daniel Remondini, Nathan Intrator, Gastone C. Castellani
The Effect of Noise on a Class of Energy-Based Learning Rules. Neural Comput. 15 (7) (2003)
Daniel Remondini, Nathan Intrator, Gastone C. Castellani, F. Bersani, Leon N. Cooper
Optimal spontaneous activity in neural network modeling. Neurocomputing (2002)
Harel Z. Shouval, Gastone C. Castellani, Brian S. Blais, Luk-Chong Yeung, Leon N. Cooper
Converging evidence for a simplified biophysical model of synaptic plasticity. Biol. Cybern. 87 (5-6) (2002)