José C. M. Mombach

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 2

Top Topics

Model Construction

Correlation Analysis

Mathematical Framework

Top Venues

Comput. Phys. Commun.

Comput. Biol. Medicine

Publications

Tiago de Souza Farias, Vitor Vaz Schultz, José C. M. Mombach, Jonas Maziero
A differentiable programming framework for spin models. Comput. Phys. Commun. 302 (2024)
Carla A. R. S. Fontoura, Gastone C. Castellani, José C. M. Mombach
The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data. Comput. Biol. Medicine 78 (2016)
Mauro A. A. Castro, José L. Rybarczyk Filho, Rodrigo J. S. Dalmolin, Marialva Sinigaglia, José C. F. Moreira, José C. M. Mombach, Rita M. C. de Almeida
ViaComplex: software for landscape analysis of gene expression networks in genomic context. Bioinform. 25 (11) (2009)
José C. M. Mombach, Ney Lemke, Norma M. da Silva, Rejane A. Ferreira, Eduardo Isaia, Cláudia K. Barcellos
Bioinformatics analysis of mycoplasma metabolism: Important enzymes, metabolic similarities, and redundancy. Comput. Biol. Medicine 36 (5) (2006)
Marcos A. Knewitz, José C. M. Mombach
Computer simulation of the influence of cellular adhesion on the morphology of the interface between tissues of proliferating and quiescent cells. Comput. Biol. Medicine 36 (1) (2006)
Fernando Piccini Cercato, José C. M. Mombach, Gerson G. H. Cavalheiro
High Performance Simulations of the Cellular Potts Model. HPCS (2006)
Éder Gusatto, José C. M. Mombach, Fernando Piccini Cercato, Gerson G. H. Cavalheiro
An Efficient Parallel Algorithm to Evolve Simulations of the Cellular Potts Model. Parallel Process. Lett. 15 (1-2) (2005)
Marcelo Cezar Pinto, Luciana Foss, José C. M. Mombach, Leila Ribeiro
Modeling and Property Verification of Lactose Operon Regulation. BSB (2005)
Eduardo Battistella, José Souza, Cláudia K. Barcellos, Ney Lemke, José C. M. Mombach
An Integrated Model for Cellular Analysis. WOB (2004)
Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, Adriana Neves dos Reis, José C. M. Mombach
Essentiality and damage in metabolic networks. Bioinform. 20 (1) (2004)
Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, José C. M. Mombach
A Method to Identify Essential Enzymes in the Metabolism: Application to Escherichia Coli. CMSB (2003)
Adriana Neves dos Reis, Cláudia K. Barcellos, Fabiana Herédia, Jean J. Schmith, José C. M. Mombach, Ney Lemke, Rejane A. Ferreira
Analysis of Functional Interactions of Enzymes in Mycoplasma pneumoniae. WOB (2002)