Nicola Neretti

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 5

Top Topics

Average Precision

Analysis Of Gene Expression Data

Bayesian Estimation

Top Venues

J. Comput. Biol.

PLoS Comput. Biol.

Publications

Carlos Soto, Darshan W. Bryner, Audrey Dalgarno, Nicola Neretti, Anuj Srivastava
TADBay: A Bayesian Construction of Topologically Associated Domains. BIBM (2022)
Carlos Soto, Audrey Dalgarno, Darshan Bryner, Benjamin McLaughlin, Nicola Neretti, Anuj Srivastava
Representation of Chromosome Conformations Using a Shape Alphabet Across Modeling Methods. BIBM (2021)
Carlos Soto, Darshan Bryner, Nicola Neretti, Anuj Srivastava
Toward a Three-Dimensional Chromosome Shape Alphabet. J. Comput. Biol. 28 (6) (2021)
Michael Rosenthal, Darshan Bryner, Fred W. Huffer, Shane Evans, Anuj Srivastava, Nicola Neretti
Bayesian Estimation of Three-Dimensional Chromosomal Structure from Single-Cell Hi-C Data. J. Comput. Biol. 26 (11) (2019)
Darshan Bryner, Stephen Criscione, Andrew Leith, Quyen Huynh, Fred W. Huffer, Nicola Neretti
GINOM: A statistical framework for assessing interval overlap of multiple genomic features. PLoS Comput. Biol. 13 (6) (2017)
Michael Antosh, David Fox, Leon N. Cooper, Nicola Neretti
CORaL: Comparison of Ranked Lists for Analysis of Gene Expression Data. J. Comput. Biol. 20 (6) (2013)
Kio Kim, Nicola Neretti, Nathan Intrator
MAP fusion method for superresolution of images with locally varying pixel quality. Int. J. Imaging Syst. Technol. 18 (4) (2008)
Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M. Sedivy, Leon N. Cooper, Ettore Verondini, Luciano Milanesi, Gastone C. Castellani
Reconstructing networks of pathways via significance analysis of their intersections. BMC Bioinform. 9 (S-4) (2008)
Nicola Neretti, Daniel Remondini, Marc Tatar, John M. Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastone C. Castellani
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. BMC Bioinform. 8 (S-1) (2007)
Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani
Networks from Gene Expression Time Series: Characterization of Correlation Patterns. Int. J. Bifurc. Chaos 17 (7) (2007)
Kio Kim, Nicola Neretti, Nathan Intrator
Video Enhancement for Underwater Exploration Using Forward Looking Sonar. ACIVS (2006)
Kio Kim, Nathan Intrator, Nicola Neretti
Image registration and mosaicing of noisy acoustic camera images. ICECS (2004)
Nicola Neretti, Nathan Intrator, Leon N. Cooper
Adaptive pulse optimization for improved sonar range accuracy. IEEE Signal Process. Lett. 11 (4) (2004)
Nicola Neretti, Nathan Intrator
An adaptive approach to wavelet filters design. NNSP (2002)