Gail L. Rosen

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 7

Top Topics

Evolutionary Optimization

Protein Sequences

Feature Representations

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

J. Chem. Inf. Model.

Publications

Rohan Chandraghatgi, Hai-Feng Ji, Gail L. Rosen, Bahrad A. Sokhansanj
Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening. J. Chem. Inf. Model. 64 (9) (2024)
Bahrad A. Sokhansanj, Gail L. Rosen
Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning. Comput. Biol. Medicine 149 (2022)
Palash Pandey, Sanjeevani Arora, Gail L. Rosen
MetaMutationalSigs: comparison of mutational signature refitting results made easy. Bioinform. 38 (8) (2022)
Mali Halac, Bahrad Sokhansanj, William L. Trimble, Thomas Coard, Norman C. Sabin, Emrecan Ozdogan, Robi Polikar, Gail L. Rosen
Incremental & Semi-Supervised Learning for Functional Analysis of Protein Sequences. SSCI (2021)
Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail L. Rosen
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network. PLoS Comput. Biol. 17 (9) (2021)
Zhengqiao Zhao, Bahrad A. Sokhansanj, Charvi Malhotra, Kitty Zheng, Gail L. Rosen
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization. PLoS Comput. Biol. 16 (9) (2020)
Stephen Woloszynek, Zhengqiao Zhao, Jian Chen, Gail L. Rosen
16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses. PLoS Comput. Biol. 15 (2) (2019)
Gregory Ditzler, Gail L. Rosen, Robi Polikar
Domain adaptation bounds for multiple expert systems under concept drift. IJCNN (2014)
Gregory Ditzler, Gail L. Rosen
Feature subset selection for inferring relative importance of taxonomy. BCB (2014)
Yemin Lan, J. Calvin Morrison, Ruth Hershberg, Gail L. Rosen
POGO-DB - a database of pairwise-comparisons of genomes and conserved orthologous genes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Loni Philip Tabb, Wei Zhao, Jingyu Huang, Gail L. Rosen
-mers in the Presence of Nullomers. J. Comput. Biol. 21 (10) (2014)
Gregory Ditzler, Matthew Austen, Gail L. Rosen, Robi Polikar
Scaling a neyman-pearson subset selection approach via heuristics for mining massive data. CIDM (2014)
Xin Chen, Xiaohua Hu, Tze Yee Lim, Xiajiong Shen, E. K. Park, Gail L. Rosen
Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Gail L. Rosen, Jason Silverman, Steven D. Essinger
Inquiry-Based Learning Through Image Processing [dsp Education]. IEEE Signal Process. Mag. 29 (1) (2012)
Gregory Ditzler, Gail L. Rosen, Robi Polikar
Transductive learning algorithms for nonstationary environments. IJCNN (2012)
Elaine Garbarine, Joseph DePasquale, Vinay Gadia, Robi Polikar, Gail L. Rosen
Information-theoretic approaches to SVM feature selection for metagenome read classification. Comput. Biol. Chem. 35 (3) (2011)
Gail L. Rosen, Erin R. Reichenberger, Aaron M. Rosenfeld
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads. Bioinform. 27 (1) (2011)
Non G. Yok, Gail L. Rosen
Combining gene prediction methods to improve metagenomic gene annotation. BMC Bioinform. 12 (2011)
Steven D. Essinger, Robi Polikar, Gail L. Rosen
Neural network-based taxonomic clustering for metagenomics. IJCNN (2010)
Steven D. Essinger, Gail L. Rosen
Benchmarking BLAST Accuracy of Genus/Phyla Classification of Metagenomic Reads. Pacific Symposium on Biocomputing (2010)
Steven D. Essinger, Gail L. Rosen
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy. BIBE (2010)
Gail L. Rosen, Elaine Garbarine, Diamantino Caseiro, Robi Polikar, Bahrad A. Sokhansanj
Metagenome Fragment Classification Using N-Mer Frequency Profiles. Adv. Bioinformatics 2008 (2008)
Gail L. Rosen, Paul E. Hasler
Chemical Source Localization in Unknown Turbulence Using the Cross-Correlation Method. ICASSP (3) (2006)
Gail L. Rosen, Jeffrey D. Moore
Investigation of coding structure in DNA. ICASSP (2) (2003)