Bahrad A. Sokhansanj

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 7

Top Topics

Evolutionary Optimization

Protein Sequences

Sequence Analysis

Top Venues

PLoS Comput. Biol.

J. Chem. Inf. Model.

Publications

Rohan Chandraghatgi, Hai-Feng Ji, Gail L. Rosen, Bahrad A. Sokhansanj
Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening. J. Chem. Inf. Model. 64 (9) (2024)
Hyunwoo Yoo, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
Predicting Anti-microbial Resistance using Large Language Models. CoRR (2024)
Adriana Fasino, Emrecan Ozdogan, Bahrad A. Sokhansanj, Gail Rosen, Robi Polikar
Semi-Supervised and Incremental Sequence Analysis for Taxonomic Classification. SSCI (2023)
Emrecan Ozdogan, Adriana Fasino, Rachel Nguyen, Bahrad A. Sokhansanj, Gail Rosen, Robi Polikar
Semi-supervised and Incremental VSEARCH for Metagenomic Classification. SSCI (2022)
Bahrad A. Sokhansanj, Gail L. Rosen
Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning. Comput. Biol. Medicine 149 (2022)
Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail L. Rosen
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network. PLoS Comput. Biol. 17 (9) (2021)
Zhengqiao Zhao, Bahrad A. Sokhansanj, Charvi Malhotra, Kitty Zheng, Gail L. Rosen
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization. PLoS Comput. Biol. 16 (9) (2020)
Xiaohua Hu, Michael K. Ng, Fang-Xiang Wu, Bahrad A. Sokhansanj
Mining, Modeling, and Evaluation of Subnetworks From Large Biomolecular Networks and Its Comparison Study. IEEE Trans. Inf. Technol. Biomed. 13 (2) (2009)
Gail L. Rosen, Elaine Garbarine, Diamantino Caseiro, Robi Polikar, Bahrad A. Sokhansanj
Metagenome Fragment Classification Using N-Mer Frequency Profiles. Adv. Bioinformatics 2008 (2008)
He Zhao, Bahrad A. Sokhansanj
Integrated modeling methodology for microtubule dynamics and Taxol kinetics with experimentally identifiable parameters. Comput. Methods Programs Biomed. 88 (1) (2007)
Suman Datta, Bahrad A. Sokhansanj
Accelerated search for biomolecular network models to interpret high-throughput experimental data. BMC Bioinform. 8 (2007)
Xiaohua Hu, Bahrad A. Sokhansanj, Daniel Duanqing Wu, Yuchun Tang
A Novel Approach for Mining and Fuzzy Simulation of Subnetworks From Large Biomolecular Networks. IEEE Trans. Fuzzy Syst. 15 (6) (2007)
Xiaohua Hu, Fang-Xiang Wu, Michael K. Ng, Bahrad A. Sokhansanj
Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks. IC-AI (2007)
Weizhong Zhu, Xia Lin, Xiaohua Hu, Bahrad A. Sokhansanj
Visualization of protein-protein interaction network for knowledge discovery. GrC (2005)
Bahrad A. Sokhansanj, J. Patrick Fitch, Judy N. Quong, Andrew A. Quong
Linear fuzzy gene network models obtained from microarray data by exhaustive search. BMC Bioinform. 5 (2004)
Andrew A. Quong, J. R. Kercher, Paula M. McCready, Judy N. Quong, Bahrad A. Sokhansanj, J. Patrick Fitch
An indexed modeling and experimental strategy for biosignatures of pathogen and host. J. Frankl. Inst. 341 (1-2) (2004)
J. Patrick Fitch, Jefferson Ng, Bahrad A. Sokhansanj
Matrix formulation of a universal microbial transcript profiling system. ICASSP (2001)
J. Patrick Fitch, Bahrad A. Sokhansanj
Genomic engineering: moving beyond DNA sequence to function. Proc. IEEE 88 (12) (2000)