Emre Sefer

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 16

Top Topics

Convolutional Neural Networks

Diffusion Processes

Risk Minimization

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

COMPLEX NETWORKS (2)

Publications

Abdul Haluk Batur Gezici, Emre Sefer
Deep Transformer-Based Asset Price and Direction Prediction. IEEE Access 12 (2024)
Betul Seyhan, Emre Sefer
NFT Primary Sale Price and Secondary Sale Prediction via Deep Learning. ICAIF (2023)
Emre Sefer, Samuel Gilmour
Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models. COMPLEX NETWORKS (2) (2023)
Gorkem Yencak, Emre Sefer
SGD with Partial Hessian for Deep Recommendation System Optimization. ICDM (Workshops) (2023)
Necla Nisa Soylu, Emre Sefer
BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Tuna Tuncer, Uygar Kaya, Emre Sefer, Onur Alacam, Tugcan Hoser
Asset Price and Direction Prediction via Deep 2D Transformer and Convolutional Neural Networks. ICAIF (2022)
Emre Sefer
MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data. Turkish J. Electr. Eng. Comput. Sci. 30 (7) (2022)
Emre Sefer
A comparison of topologically associating domain callers over mammals at high resolution. BMC Bioinform. 23 (1) (2022)
Ugur Dolu, Emre Sefer
A Novel GBT-Based Approach for Cross-Channel Fraud Detection on Real-World Banking Transactions. AIAI (1) (2022)
Emre Sefer
BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Emre Sefer
Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape. Appl. Netw. Sci. 6 (1) (2021)
Emre Sefer
Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph. COMPLEX NETWORKS (2) (2020)
Emre Sefer, Carl Kingsford
Semi-nonparametric modeling of topological domain formation from epigenetic data. Algorithms Mol. Biol. 14 (1) (2019)
Emre Sefer, Geet Duggal, Carl Kingsford
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. J. Comput. Biol. 23 (6) (2016)
Emre Sefer, Carl Kingsford
Diffusion archeology for diffusion progression history reconstruction. Knowl. Inf. Syst. 49 (2) (2016)
Emre Sefer, Ziv Bar-Joseph
Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments. RECOMB (2016)
Emre Sefer, Carl Kingsford
Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales. ICDE (2015)
Emre Sefer, Geet Duggal, Carl Kingsford
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. RECOMB (2015)
Emre Sefer, Carl Kingsford
Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data. WABI (2015)
Emre Sefer, Carl Kingsford
Diffusion Archaeology for Diffusion Progression History Reconstruction. ICDM (2014)
Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford
Resolving spatial inconsistencies in chromosome conformation measurements. Algorithms Mol. Biol. 8 (2013)
Rob Patro, Geet Duggal, Emre Sefer, Hao Wang, Darya Filippova, Carl Kingsford
The missing models: a data-driven approach for learning how networks grow. KDD (2012)
Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford
Resolving Spatial Inconsistencies in Chromosome Conformation Data. WABI (2012)
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
Parsimonious reconstruction of network evolution. Algorithms Mol. Biol. 7 (2012)
Emre Sefer, Carl Kingsford
Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction. RECOMB (2011)
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
Parsimonious Reconstruction of Network Evolution. WABI (2011)
Robert Gove, Nick Gramsky, Rose Kirby, Emre Sefer, Awalin Sopan, Cody Dunne, Ben Shneiderman, Meirav Taieb-Maimon
NetVisia: Heat Map & Matrix Visualization of Dynamic Social Network Statistics & Content. SocialCom/PASSAT (2011)
Dana S. Nau, Ugur Kuter, Emre Sefer
Thinking Ahead in Real-Time Search. ICAPS (2009)