David M. Rocke

Publication Activity (10 Years)

Years Active: 1999-2020
Publications (10 Years): 6

Top Topics

Conditional Likelihood

Structured Prediction

Unsupervised Learning

Tandem Mass Spectra

Top Venues

Publications

John T. Halloran, David M. Rocke
GPU-Accelerated Primal Learning for Extremely Fast Large-Scale Classification. CoRR (2020)
John T. Halloran, David M. Rocke
GPU-Accelerated Primal Learning for Extremely Fast Large-Scale Classification. NeurIPS (2020)
John T. Halloran, David M. Rocke
Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra. CoRR (2019)
John T. Halloran, David M. Rocke
Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra. CoRR (2019)
John T. Halloran, David M. Rocke
Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra. NeurIPS (2018)
John T. Halloran, David M. Rocke
Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra. NIPS (2017)
David M. Rocke, Trey Ideker, Olga G. Troyanskaya, John Quackenbush, Joaquín Dopazo
Papers on normalization, variable selection, classification or clustering of microarray data. Bioinform. 25 (6) (2009)
Donald A. Barkauskas, Hyun Joo An, Scott R. Kronewitter, Maria Lorna de Leoz, Helen K. Chew, Ralph W. de Vere White, Gary S. Leiserowitz, Suzanne Miyamoto, Carlito B. Lebrilla, David M. Rocke
Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data. Bioinform. 25 (2) (2009)
Yuanxin Xi, David M. Rocke
Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis. BMC Bioinform. 9 (2008)
Ruixiao Lu, Geun-Cheol Lee, Michael Shultz, Chris Dardick, Kihong Jung, Jirapa Phetsom, Yi Jia, Robert H. Rice, Zelanna Goldberg, Patrick S. Schnable, Pamela C. Ronald, David M. Rocke
Assessing probe-specific dye and slide biases in two-color microarray data. BMC Bioinform. 9 (2008)
Jingjing Ye, Hao Liu, Crystal Kirmiz, Carlito B. Lebrilla, David M. Rocke
On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinform. 8 (2007)
Lei Zhou, David M. Rocke
An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinform. 21 (21) (2005)
David M. Rocke, Zelanna Goldberg, Chad Schweitert, Alison Santana
A method for detection of differential gene expression in the presence of inter-individual variability in response. Bioinform. 21 (21) (2005)
Shagufta Aslam, David M. Rocke
A robust testing procedure for the equality of covariance matrices. Comput. Stat. Data Anal. 49 (3) (2005)
Jian J. Dai, Stefan Lorenzato, David M. Rocke
A knowledge-based model of watershed assessment for sediment. Environ. Model. Softw. 19 (4) (2004)
Blythe Durbin, David M. Rocke
Variance-stabilizing transformations for two-color microarrays. Bioinform. 20 (5) (2004)
Johanna S. Hardin, David M. Rocke
Outlier detection in the multiple cluster setting using the minimum covariance determinant estimator. Comput. Stat. Data Anal. 44 (4) (2004)
Danh V. Nguyen, David M. Rocke
On partial least squares dimension reduction for microarray-based classification: a simulation study. Comput. Stat. Data Anal. 46 (3) (2004)
Machelle D. Wilson, Susan L. Ustin, David M. Rocke
Classification of contamination in salt marsh plants using hyperspectral reflectance. IEEE Trans. Geosci. Remote. Sens. 42 (5) (2004)
Sue C. Geller, Jeff P. Gregg, Paul Hagerman, David M. Rocke
Transformation and normalization of oligonucleotide microarray data. Bioinform. 19 (14) (2003)
David M. Rocke, Jian J. Dai
Sampling and Subsampling for Cluster Analysis in Data Mining: With Applications to Sky Survey Data. Data Min. Knowl. Discov. 7 (2) (2003)
Blythe Durbin, David M. Rocke
Estimation of Transformation Parameters for Microarray Data. Bioinform. 19 (11) (2003)
David M. Rocke, Blythe Durbin
Approximate Variance-stabilizing Transformations for Gene-expression Microarray Data. Bioinform. 19 (8) (2003)
Danh V. Nguyen, David M. Rocke
Partial least squares proportional hazard regression for application to DNA microarray survival data. Bioinform. 18 (12) (2002)
Danh V. Nguyen, David M. Rocke
Tumor classification by partial least squares using microarray gene expression data. Bioinform. 18 (1) (2002)
Danh V. Nguyen, David M. Rocke
Multi-class cancer classification via partial least squares with gene expression profiles. Bioinform. 18 (9) (2002)
Blythe Durbin, Johanna S. Hardin, Douglas M. Hawkins, David M. Rocke
A variance-stabilizing transformation for gene-expression microarray data. ISMB (2002)
David M. Rocke, David L. Woodruff
Computational Connections between Robust Multivariate Analysis and Clustering. COMPSTAT (2002)
David M. Rocke, Blythe Durbin
A Model for Measurement Error for Gene Expression Arrays. J. Comput. Biol. 8 (6) (2001)
Jian J. Dai, David M. Rocke
A GIS-based approach to spatial allocation of area source solvent emissions. Environ. Model. Softw. 15 (2-3) (2000)
Geoffrey Jones, David M. Rocke
Bootstrapping in Controlled Calibration Experiments. Technometrics 41 (3) (1999)