Claus O. Wilke

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 10

Top Topics

Chemical Structures

Gene Expression

Microarray Datasets

Color Difference

Top Venues

J. Open Source Softw.

J. Stat. Softw.

Publications

Clayton W. Kosonocky, Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington
Mining Patents with Large Language Models Demonstrates Congruence of Functional Labels and Chemical Structures. CoRR (2023)
Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington
Prompt Engineering for Transformer-based Chemical Similarity Search Identifies Structurally Distinct Functional Analogues. CoRR (2023)
Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington
Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches. Patterns 4 (12) (2023)
Alexis Hill, James Rybarski, Kuang Hu, Ilya Finkelstein, Claus O. Wilke
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets. J. Open Source Softw. 6 (66) (2021)
Achim Zeileis, Jason C. Fisher, Kurt Hornik, Ross Ihaka, Claire D. McWhite, Paul Murrell, Reto Stauffer, Claus O. Wilke
colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes. J. Stat. Softw. 96 (1) (2020)
Achim Zeileis, Jason C. Fisher, Kurt Hornik, Ross Ihaka, Claire D. McWhite, Paul Murrell, Reto Stauffer, Claus O. Wilke
colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes. CoRR (2019)
Adam J. Hockenberry, Claus O. Wilke
Phylogenetic Weighting Does Little to Improve the Accuracy of Evolutionary Coupling Analyses. Entropy 21 (10) (2019)
Benjamin R. Jack, Claus O. Wilke
Pinetree: a step-wise gene expression simulator with codon-specific translation rates. Bioinform. 35 (20) (2019)
Hadley Wickham, Mara Averick, Jennifer Bryan, Winston Chang, Lucy McGowan, Romain François, Garrett Grolemund, Alex Hayes, Lionel Henry, Jim Hester, Max Kuhn, Thomas Lin Pedersen, Evan Miller, Stephan Bache, Kirill Müller, Jeroen Ooms, David Robinson, Dana Paige Seidel, Vitalie Spinu, Kohske Takahashi, Davis Vaughan, Claus O. Wilke, Kara H. Woo, Hiroaki Yutani
Welcome to the Tidyverse. J. Open Source Softw. 4 (43) (2019)
John R. Houser, Craig Barnhart, Daniel R. Boutz, Sean M. Carroll, Aurko Dasgupta, Joshua K. Michener, Brittany D. Needham, Ophelia Papoulas, Viswanadham Sridhara, Dariya K. Sydykova, Christopher J. Marx, M. Stephen Trent, Jeffrey E. Barrick, Edward M. Marcotte, Claus O. Wilke
Reveals Broad Regulatory Changes in Response to Glucose Starvation. PLoS Comput. Biol. 11 (8) (2015)
Claus O. Wilke
Bringing Molecules Back into Molecular Evolution. PLoS Comput. Biol. 8 (6) (2012)
Daifeng Wang, Mia K. Markey, Claus O. Wilke, Ari Arapostathis
Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (2) (2012)
Arthur W. Covert III, Jared Carlson-Stevermer, Dakota Z. Derrberry, Claus O. Wilke
The role of deleterious mutations in the adaptation to a novel environment. ALIFE (2012)
Arthur W. Covert III, Jared Carlson-Stevermer, Dakota Z. Derrberry, Claus O. Wilke
What does sex have to do with it: tracking the fate of deleterious mutations in sexual populations. ALIFE (2012)
Eamon B. O'Dea, Thomas E. Keller, Claus O. Wilke
Does Mutational Robustness Inhibit Extinction by Lethal Mutagenesis in Viral Populations? PLoS Comput. Biol. 6 (6) (2010)
Wanjun Gu, Tong Zhou, Claus O. Wilke
A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes. PLoS Comput. Biol. 6 (2) (2010)
Christoph Adami, Claus O. Wilke
Experiments in Digital Evolution (Editors' Introduction to the Special Issue). Artif. Life 10 (2) (2004)
Tyler J. Johnson, Claus O. Wilke
Evolution of Resource Competition between Mutually Dependent Digital Organisms. Artif. Life 10 (2) (2004)
Charles Ofria, Claus O. Wilke
Avida: A Software Platform for Research in Computational Evolutionary Biology. Artif. Life 10 (2) (2004)
Ye Li, Claus O. Wilke
Digital Evolution in Time-Dependent Fitness Landscapes. Artif. Life 10 (2) (2004)
Christel Kamp, Claus O. Wilke, Christoph Adami, Stefan Bornholdt
Viral evolution under the pressure of an adaptive immune system: Optimal mutation rates for viral escape. Complex. 8 (2) (2003)
Claus O. Wilke
Does the Red Queen Reign in the Kingdom of Digital Organisms? ECAL (2003)
Claus O. Wilke
Adaptive evolution on neutral networks CoRR (2001)
Claus O. Wilke
Dynamische Fitnesslandschaften. Künstliche Intell. 14 (1) (2000)
Claus O. Wilke, Christopher Ronnewinkel, Thomas Martinetz
Molecular Evolution in Time-Dependent Environments. ECAL (1999)
Christopher Ronnewinkel, Claus O. Wilke, Thomas Martinetz
Genetic Algorithms in Time-Dependent Environments CoRR (1999)