Andrew D. Ellington

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 6

Top Topics

Skill Development

Pattern Generation

Top Venues

Publications

Clayton W. Kosonocky, Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington
Mining Patents with Large Language Models Demonstrates Congruence of Functional Labels and Chemical Structures. CoRR (2023)
Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington
Prompt Engineering for Transformer-based Chemical Similarity Search Identifies Structurally Distinct Functional Analogues. CoRR (2023)
Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington
Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches. Patterns 4 (12) (2023)
Tianlong Chen, Chengyue Gong, Daniel Jesus Diaz, Xuxi Chen, Jordan Tyler Wells, Qiang Liu, Zhangyang Wang, Andrew D. Ellington, Alex Dimakis, Adam R. Klivans
HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing. ICLR (2023)
Gwendolyn M. Stovall, Vincent Huynh, Shelly Engelman, Andrew D. Ellington
Aptamers in Education: Undergraduates Make Aptamers and Acquire 21st Century Skills Along the Way. Sensors 19 (15) (2019)
Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik
The Design Space of Strand Displacement Cascades with Toehold-Size Clamps. DNA (2017)
Peter B. Allen, Xi Chen, Zack B. Simpson, Andrew D. Ellington
Modeling scalable pattern generation in DNA reaction networks. Nat. Comput. 13 (4) (2014)
Arun Manickam, Rituraj Singh, Nicholas Wood, Bingling Li, Andrew D. Ellington, Arjang Hassibi
A fully-electronic charge-based DNA sequencing CMOS biochip. VLSIC (2012)
Peter B. Allen, Xi Chen, Zack B. Simpson, Andrew D. Ellington
Modeling Scalable Pattern Generation in DNA Reaction Networks. ALIFE (2012)
Eric A. Davidson, Thomas Van Blarcom, Matthew Levy, Andrew D. Ellington
Emulsion Based Selection of T7 Promoters of Varying Activity. Pacific Symposium on Biocomputing (2010)
Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi
A CMOS electrochemical impedance spectroscopy biosensor array for label-free biomolecular detection. ISSCC (2010)
Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi
A CMOS Electrochemical Impedance Spectroscopy (EIS) Biosensor Array. IEEE Trans. Biomed. Circuits Syst. 4 (6) (2010)
Xi Chen, Andrew D. Ellington
Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes. PLoS Comput. Biol. 5 (12) (2009)
Byungchul Jang, Peiyan Cao, Aaron Chevalier, Andrew D. Ellington, Arjang Hassibi
A CMOS fluorescent-based biosensor microarray. ISSCC (2009)
Peng Yu, Xi Chen, David Z. Pan, Andrew D. Ellington
Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock. BIBM (2008)
Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington
AANT: the Amino Aciduchleotide Interaction Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, Andrew D. Ellington
Aptamer Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Michael P. Robertson, Jay R. Hesselberth, J. Colin Cox, Andrew D. Ellington
Designing and selecting components for nucleic acid computers. DNA Based Computers (1999)
Andrew D. Ellington, Michael P. Robertson, Ken D. James, J. Colin Cox
Strategies for DNA computing. DNA Based Computers (1997)