Benzhuo Lu

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 25

Top Topics

Top Venues

J. Comput. Phys.

Comput. Phys. Commun.

SIAM J. Sci. Comput.

Publications

Wenxuan Zhang, Benzhuo Lu
Stock Trend Prediction with Machine Learning: Incorporating Inter-Stock Correlation Information through Laplacian Matrix. Big Data Cogn. Comput. 8 (6) (2024)
Minrui Lv, Benzhuo Lu
A flux-based moving mesh method applied to solving the Poisson-Nernst-Planck equations. J. Comput. Phys. 513 (2024)
Sidi Wu, Aiqing Zhu, Yifa Tang, Benzhuo Lu
Solving parametric elliptic interface problems via interfaced operator network. J. Comput. Phys. 514 (2024)
Sidi Wu, Aiqing Zhu, Yifa Tang, Benzhuo Lu
Solving parametric elliptic interface problems via interfaced operator network. CoRR (2023)
Keying Ma, Jianbo Lu, Benzhuo Lu
Parameter-Efficient Densely Connected Dual Attention Network for Phonocardiogram Classification. IEEE J. Biomed. Health Informatics 27 (9) (2023)
Zhen Chao, Sheng Gui, Benzhuo Lu, Dexuan Xie
Efficient Generation of Membrane and Solvent Tetrahedral Meshes for Ion Channel Finite Element Calculation. CoRR (2022)
Wanwan Zhu, Ying Yang, Guanghua Ji, Benzhuo Lu
Residual Type a Posteriori Error Estimates for the Time-Dependent Poisson-Nernst-Planck Equations. J. Sci. Comput. 90 (1) (2022)
Sidi Wu, Aiqing Zhu, Benzhuo Lu
On convergence of neural network methods for solving elliptic interface problems. CoRR (2022)
Sidi Wu, Benzhuo Lu
INN: Interfaced neural networks as an accessible meshless approach for solving interface PDE problems. J. Comput. Phys. 470 (2022)
Qianru Zhang, Qin Wang, Linbo Zhang, Benzhuo Lu
A class of finite element methods with averaging techniques for solving the three-dimensional drift-diffusion model in semiconductor device simulations. J. Comput. Phys. 458 (2022)
Qianru Zhang, Bin Tu, Qiaojun Fang, Benzhuo Lu
A structure-preserving finite element discretization for the time-dependent Nernst-Planck equation. J. Appl. Math. Comput. 68 (3) (2022)
Ruigang Shen, Qianru Zhang, Benzhuo Lu
An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations. CoRR (2021)
Jinyong Ying, Ronghong Fan, Jiao Li, Benzhuo Lu
A new block preconditioner and improved finite element solver of Poisson-Nernst-Planck equation. J. Comput. Phys. 430 (2021)
Qin Wang, Hongliang Li, Linbo Zhang, Benzhuo Lu
A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations. Appl. Math. Lett. 111 (2021)
Sheng Gui, Zhaodi Chen, Minxin Chen, Benzhuo Lu
Molecular Sparse Representation by 3D Ellipsoid Radial Basis Function Neural Networks via $L_1$ Regularization. CoRR (2020)
Qianru Zhang, Sheng Gui, Hongliang Li, Benzhuo Lu
Model reduction-based initialization methods for solving the Poisson-Nernst-Plank equations in three-dimensional ion channel simulations. J. Comput. Phys. 419 (2020)
Sheng Gui, Zhaodi Chen, Benzhuo Lu, Minxin Chen
Molecular Sparse Representation by a 3D Ellipsoid Radial Basis Function Neural Network via L1 Regularization. J. Chem. Inf. Model. 60 (12) (2020)
Ruigang Shen, Shi Shu, Ying Yang, Benzhuo Lu
A decoupling two-grid method for the time-dependent Poisson-Nernst-Planck equations. Numer. Algorithms 83 (4) (2020)
Ying Yang, Ming Tang, Chun Liu, Benzhuo Lu, Liuqiang Zhong
Superconvergent gradient recovery for nonlinear Poisson-Nernst-Planck equations with applications to the ion channel problem. Adv. Comput. Math. 46 (6) (2020)
Dexuan Xie, Benzhuo Lu
An Effective Finite Element Iterative Solver for a Poisson-Nernst-Planck Ion Channel Model with Periodic Boundary Conditions. SIAM J. Sci. Comput. 42 (6) (2020)
Jiao Li, Jinyong Ying, Benzhuo Lu
A flux-jump preserved gradient recovery technique for accurately predicting the electrostatic field of an immersed biomolecule. J. Comput. Phys. 396 (2019)
Sheng Gui, Minxin Chen, Benzhuo Lu
Sparse Representation of Gaussian Molecular Surface. CoRR (2019)
Tiantian Liu, Minxin Chen, Benzhuo Lu
Efficient and Qualified Mesh Generation for Gaussian Molecular Surface Using Adaptive Partition and Piecewise Polynomial Approximation. SIAM J. Sci. Comput. 40 (2) (2018)
Xuejiao Liu, Yu Qiao, Benzhuo Lu
Analysis of the Mean Field Free Energy Functional of Electrolyte Solution with Nonhomogenous Boundary Conditions and the Generalized PB/PNP Equations with Inhomogeneous Dielectric Permittivity. SIAM J. Appl. Math. 78 (2) (2018)
Jianbo Lu, Guoliang Xu, Shihua Zhang, Benzhuo Lu
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data. Algorithms Mol. Biol. 11 (2016)
Bo Zhang, Bo Peng, Jingfang Huang, Nikos P. Pitsianis, Xiaobai Sun, Benzhuo Lu
Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy. Comput. Phys. Commun. 190 (2015)
Bin Tu, Yan Xie, Linbo Zhang, Benzhuo Lu
Stabilized finite element methods to simulate the conductances of ion channels. Comput. Phys. Commun. 188 (2015)
Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, James Andrew McCammon
AFMPB: An adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems. Comput. Phys. Commun. 184 (11) (2013)
Bin Tu, Minxin Chen, Yan Xie, Linbo Zhang, Bob Eisenberg, Benzhuo Lu
A parallel finite element simulator for ion transport through three-dimensional ion channel systems. J. Comput. Chem. 34 (24) (2013)
Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, James Andrew McCammon
AFMPB: An adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems. Comput. Phys. Commun. 181 (6) (2010)
Benzhuo Lu, Michael J. Holst, James Andrew McCammon, Yongcheng Zhou
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions. J. Comput. Phys. 229 (19) (2010)
Benzhuo Lu, Xiaolin Cheng, James Andrew McCammon
"New-version-fast-multipole-method" accelerated electrostatic calculations in biomolecular systems. J. Comput. Phys. 226 (2) (2007)
Tingjun Hou, Ken Chen, William A. McLaughlin, Benzhuo Lu, Wei Wang
Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain. PLoS Comput. Biol. 2 (1) (2006)