Alioune Ngom

ORCID

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 32

Top Venues

Publications

Seyedeh Shaghayegh Sadeghi, Alan Bui, Ali Forooghi, Jianguo Lu, Alioune Ngom
Can large language models understand molecules? BMC Bioinform. 25 (1) (2024)
Seyedeh Shaghayegh Sadeghi, Alan Bui, Ali Forooghi, Jianguo Lu, Alioune Ngom
Comparative Analysis of LLaMA and ChatGPT Embeddings for Molecule Embedding. CoRR (2024)
Mahmoud Khalil, Ahmad Khalil, Alioune Ngom
A Comprehensive Study of Vision Transformers in Image Classification Tasks. CoRR (2023)
Seyedeh Shaghayegh Sadeghi, Jianguo Lu, Alioune Ngom
A network-based drug repurposing method via non-negative matrix factorization. Bioinform. 38 (5) (2022)
Forough Firoozbakht, Iman Rezaeian, Luis Rueda, Alioune Ngom
Computationally repurposing drugs for breast cancer subtypes using a network-based approach. BMC Bioinform. 23 (1) (2022)
Seyedeh Shaghayegh Sadeghi, Alioune Ngom
DDIPred: Graph Convolutional Network-Based Drug-drug Interactions Prediction Using Drug Chemical Structure Embedding. CIBCB (2022)
Alexandru Filip, Seyedeh Shaghayegh Sadeghi, Alioune Ngom, Luis Rueda
DeePSLiM: A Deep Learning Approach to Identify Predictive Short-linear Motifs for Protein Sequence Classification. CIBCB (2022)
Sheikh Jubair, Abedalrhman Alkhateeb, Ashraf Abou Tabl, Luis Rueda, Alioune Ngom
A novel approach to identify subtype-specific network biomarkers of breast cancer survivability. Netw. Model. Anal. Health Informatics Bioinform. 9 (1) (2020)
Ishpreet Singh, Narinder Pal Singh, Harnoor Singh, Saharsh Bawankar, Alioune Ngom
Blood Cell Types Classification Using CNN. IWBBIO (2020)
Mohammad Anas Shah, Abdala Nour, Alioune Ngom, Luis Rueda
Cancer Detection Based on Image Classification by Using Convolution Neural Network. IWBBIO (2020)
Huy Quang Pham, Luis Rueda, Alioune Ngom
A Data Integration Approach for Detecting Biomarkers of Breast Cancer Survivability. IWBBIO (2020)
Huy Quang Pham, Jurko Guba, Mousa Gawanmeh, Lisa A. Porter, Alioune Ngom
A Network-based Machine Learning Approach for Identifying Biomarkers of Breast Cancer Survivability. BCB (2019)
Yifeng Li, Fang-Xiang Wu, Alioune Ngom
A review on machine learning principles for multi-view biological data integration. Briefings Bioinform. 19 (2) (2018)
Yixun Li, Mina Maleki, Nicholas J. Carruthers, Paul M. Stemmer, Alioune Ngom, Luis Rueda
The predictive performance of short-linear motif features in the prediction of calmodulin-binding proteins. BMC Bioinform. (14) (2018)
Sheikh Jubair, Luis Rueda, Alioune Ngom
Identifying suutype specific network-Uiomarkers of breast cancer survivauility. IJCNN (2018)
Ashraf Abou Tabl, Abedalrhman Alkhateeb, Luis Rueda, Waguih H. ElMaraghy, Alioune Ngom
Identification of the Treatment Survivability Gene Biomarkers of Breast Cancer Patients via a Tree-Based Approach. IWBBIO (1) (2018)
Hetal Rahul Rajpura, Alioune Ngom
Drug target interaction predictions using PU- Leaming under different experimental setting for four formulations namely known drug target pair prediction, drug prediction, target prediction and unknown drug target pair prediction. CIBCB (2018)
Yixun Li, Mina Maleki, Nicholas J. Carruthers, Luis Rueda, Paul M. Stemmer, Alioune Ngom
Prediction of Calmodulin-Binding Proteins Using Short-Linear Motifs. IWBBIO (2) (2017)
Pham Quang Huy, Luis Rueda, Alioune Ngom
Predicting Breast Cancer Outcome under Different Treatments by Feature Selection Approaches. BCB (2017)
Forough Firoozbakht, Iman Rezaeian, Michele D'agnillo, Lisa A. Porter, Luis Rueda, Alioune Ngom
An Integrative Approach for Identifying Network Biomarkers of Breast Cancer Subtypes Using Genomic, Interactomic, and Transcriptomic Data. J. Comput. Biol. 24 (8) (2017)
Naveen Mangalakumar, Abed Alkhateeb, Pham Quang Huy, Luis Rueda, Alioune Ngom
Outlier Genes as Biomarkers of Breast Cancer Survivability in Time-Series Data. BCB (2017)
Ashraf Abou Tabl, Abed Alkhateeb, Waguih H. ElMaraghy, Alioune Ngom
Machine Learning Model for Identifying Gene Biomarkers for Breast Cancer Treatment Survival. BCB (2017)
Pham Quang Huy, Alioune Ngom, Luis Rueda
PAFS - An efficient method for classifier-specific feature selection. SSCI (2016)
Iman Rezaeian, Eliseos J. Mucaki, Katherina Baranova, Huy Quang Pham, Dimo Angelov, Alioune Ngom, Luis Rueda, Peter K. Rogan
Predicting Outcomes of Hormone and Chemotherapy in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) Study by Biochemically-inspired Machine Learning. F1000Research 5 (2016)
Pham Quang Huy, Alioune Ngom, Luis Rueda
A new feature selection approach for optimizing prediction models, applied to breast cancer subtype classification. BIBM (2016)
Yifeng Li, Haifen Chen, Jie Zheng, Alioune Ngom
The Max-Min High-Order Dynamic Bayesian Network for Learning Gene Regulatory Networks with Time-Delayed Regulations. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (4) (2016)
Forough Firoozbakht, Iman Rezaeian, Alioune Ngom, Luis Rueda, Lisa A. Porter
A novel approach for finding informative genes in ten subtypes of breast cancer. CIBCB (2015)
Zina M. Ibrahim, Alioune Ngom
The relative vertex clustering value - a new criterion for the fast discovery of functional modules in protein interaction networks. BMC Bioinform. 16 (S-4) (2015)
Forough Firoozbakht, Iman Rezaeian, Alioune Ngom, Luis Rueda
A new compact set of biomarkers for distinguishing among ten breast cancer subtypes. BIBM (2015)
Yixun Li, Behzad Rezaei, Alioune Ngom, Luis Rueda
Prediction of high-throughput protein-protein interactions based on protein sequence information. CIBCB (2015)
Yifeng Li, B. John Oommen, Alioune Ngom, Luis Rueda
Pattern classification using a new border identification paradigm: The nearest border technique. Neurocomputing 157 (2015)
Yifeng Li, Alioune Ngom
Data integration in machine learning. BIBM (2015)
Yifeng Li, Richard J. Caron, Alioune Ngom
A decomposition method for large-scale sparse coding in representation learning. IJCNN (2014)
Yifeng Li, Alioune Ngom
Versatile sparse matrix factorization: Theory and applications. Neurocomputing 145 (2014)
Xing-Ming Zhao, Alioune Ngom, Jin-Kao Hao
Pattern recognition in bioinformatics. Neurocomputing 145 (2014)
Elena Marchiori, Alioune Ngom, Raj Acharya
Guest Editorial: Pattern Recognition in Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (3) (2014)
Mohammad Shamsur Rahman, Alioune Ngom
FAC-PIN: Fast agglomerative clustering method for functional modules and protein complex identification in PINs. ICCABS (2013)
Manish Pandit, Luis Rueda, Alioune Ngom
Prediction of Biological Protein-protein Interaction Types Using Short-Linear Motifs. BCB (2013)
Yifeng Li, Alioune Ngom
Sparse representation approaches for the classification of high-dimensional biological data. BMC Syst. Biol. 7 (S-4) (2013)
Mohammad Shamsur Rahman, Alioune Ngom
A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks. PRIB (2013)
Yifeng Li, Alioune Ngom
Classification approach based on non-negative least squares. Neurocomputing 118 (2013)
Iman Rezaeian, Yifeng Li, Martin Crozier, Eran Andrechek, Alioune Ngom, Luis Rueda, Lisa A. Porter
Identifying Informative Genes for Prediction of Breast Cancer Subtypes. PRIB (2013)
Yifeng Li, B. John Oommen, Alioune Ngom, Luis Rueda
A New Paradigm for Pattern Classification: Nearest Border Techniques. Australasian Conference on Artificial Intelligence (2013)
Yifeng Li, Alioune Ngom
Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis. PRIB (2013)
Yifeng Li, Alioune Ngom
The non-negative matrix factorization toolbox for biological data mining. Source Code Biol. Medicine 8 (2013)
Yifeng Li, Alioune Ngom
Nonnegative Least-Squares Methods for the Classification of High-Dimensional Biological Data. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Yifeng Li, Alioune Ngom
The max-min high-order dynamic Bayesian network learning for identifying gene regulatory networks from time-series microarray data. CIBCB (2013)
Yifeng Li, Alioune Ngom
Fast Kernel Sparse Representation Approaches for Classification. ICDM (2012)
Yifeng Li, Alioune Ngom
A new Kernel non-negative matrix factorization and its application in microarray data analysis. CIBCB (2012)
Yifeng Li, Alioune Ngom
Fast sparse representation approaches for the classification of high-dimensional biological data. BIBM (2012)
Yifeng Li, Alioune Ngom
Diagnose the Premalignant Pancreatic Cancer Using High Dimensional Linear Machine. PRIB (2012)
Yifeng Li, Alioune Ngom
Supervised Dictionary Learning via Non-negative Matrix Factorization for Classification. ICMLA (1) (2012)
Yifeng Li, Alioune Ngom, Luis Rueda
A Framework of Gene Subset Selection Using Multiobjective Evolutionary Algorithm. PRIB (2012)
Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik
Using Qualitative Probability in Reverse-Engineering Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Darío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo
Image segmentation of biofilm structures using optimal multi-level thresholding. Int. J. Data Min. Bioinform. 5 (3) (2011)
Amirali Jafarian, Alioune Ngom
A new gene subset selection approach based on linearly separating gene pairs. ICCABS (2011)
Amirali Jafarian, Alioune Ngom, Luis Rueda
New Gene Subset Selection Approaches Based on Linear Separating Genes and Gene-Pairs. PRIB (2011)
Amirali Jafarian, Alioune Ngom, Luis Rueda
A Novel Recursive Feature Subset Selection Algorithm. BIBE (2011)
Yifeng Li, Numanul Subhani, Alioune Ngom, Luis Rueda
Alignment-based versus variation-based transformation methods for clustering microarray time-series data. BCB (2010)
Alioune Ngom, Luis Rueda, Lili Wang, Robin Gras
Selection based heuristics for the non-unique oligonucleotide probe selection problem in microarray design. Pattern Recognit. Lett. 31 (14) (2010)
Numanul Subhani, Luis Rueda, Alioune Ngom, Conrad J. Burden
New approaches to clustering microarray time-series data using multiple expression profile alignment. CIBCB (2010)
Yifeng Li, Alioune Ngom
Classification of Clinical Gene-Sample-Time Microarray Expression Data via Tensor Decomposition Methods. CIBB (2010)
Yifeng Li, Alioune Ngom, Luis Rueda
Missing value imputation methods for gene-sample-time microarray data analysis. CIBCB (2010)
Zina M. Ibrahim, Alioune Ngom, Ahmed Y. Tawfik
A dynamic qualitative probabilistic network approach for extracting gene regulatory network motifs. BIBM (2010)
Madhu Chetty, Alioune Ngom, Elena Marchiori
Computational Intelligence in Bioinformatics. Neurocomputing 73 (13-15) (2010)
Xin Wu, Arunita Jaekel, Ataul Bari, Alioune Ngom
Optimized Hybrid Resource Allocation in Wireless Cellular Networks with and without Channel Reassignment. J. Comput. Networks Commun. 2010 (2010)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
A Surprise-Based Qualitative Probability Calculus II. FLAIRS Conference (2010)
Numanul Subhani, Yifeng Li, Alioune Ngom, Luis Rueda
Alignment versus variation methods for clustering microarray time-series data. IEEE Congress on Evolutionary Computation (2010)
Numanul Subhani, Luis Rueda, Alioune Ngom, Conrad J. Burden
Multiple gene expression profile alignment for microarray time-series data clustering. Bioinform. 26 (18) (2010)
Laleh Soltan Ghoraie, Robin Gras, Lili Wang, Alioune Ngom
Optimal decoding and minimal length for the non-unique oligonucleotide probe selection problem. Neurocomputing 73 (13-15) (2010)
Yifeng Li, Alioune Ngom
Non-negative matrix and tensor factorization based classification of clinical microarray gene expression data. BIBM (2010)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
A Surprise-based Qualitative Calculus. FLAIRS Conference (2009)
Xin Wu, Arunita Jaekel, Ataul Bari, Alioune Ngom
Optimized Hybrid Resource Allocation in Wireless Cellular Networks with and without Channel Reassignment. ITNG (2009)
Darío Rojas, Luis Rueda, Homero Urrutia, Alioune Ngom
Efficient Optimal Multi-level Thresholding for Biofilm Image Segmentation. PRIB (2009)
Laleh Soltan Ghoraie, Robin Gras, Lili Wang, Alioune Ngom
Bayesian Optimization Algorithm for the Non-unique Oligonucleotide Probe Selection Problem. PRIB (2009)
Darío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo
Biofilm Image Segmentation Using Optimal Multi-level Thresholding. BIBM (2009)
Numanul Subhani, Alioune Ngom, Luis Rueda, Conrad J. Burden
Microarray Time-Series Data Clustering via Multiple Alignment of Gene Expression Profiles. PRIB (2009)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
Surprise-Based Qualitative Probabilistic Networks. ECSQARU (2009)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
Qualitative Motif Detection in Gene Regulatory Networks. BIBM (2009)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
Qualitative Hidden Markov Models for Classifying Gene Expression Data. SGAI Conf. (2008)
Lili Wang, Alioune Ngom, Robin Gras
Non-unique oligonucleotide microarray probe selection method based on genetic algorithms. IEEE Congress on Evolutionary Computation (2008)
Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda
Evolution strategy with greedy probe selection heuristics for the non-unique oligonucleotide probe selection problem. CIBCB (2008)
Luis Rueda, Ataul Bari, Alioune Ngom
Clustering Time-Series Gene Expression Data with Unequal Time Intervals. Trans. Comp. Sys. Biology 10 (2008)
Lili Wang, Alioune Ngom, Luis Rueda
Sequential Forward Selection Approach to the Non-unique Oligonucleotide Probe Selection Problem. PRIB (2008)
Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda
An Evolutionary Approach to the Non-unique Oligonucleotide Probe Selection Problem. Trans. Comp. Sys. Biology 10 (2008)
Lili Wang, Alioune Ngom
A Model-Based Approach to the Non-Unique Oligonucleotide Probe Selection Problem. BIONETICS (2007)
Zina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom
A Qualitative Hidden Markov Model for Spatio-temporal Reasoning. ECSQARU (2007)
Wei Yang, Luis Rueda, Alioune Ngom
On Finding the Best Parameters of Fuzzy k-Means for Clustering Microarray Data. J. Multiple Valued Log. Soft Comput. 13 (1-2) (2007)
Alioune Ngom, Dan A. Simovici, Ivan Stojmenovic
Evolutionary Strategy for Learning Multiple-Valued Logic Functions. J. Multiple Valued Log. Soft Comput. 12 (5-6) (2006)
Rafiqul Islam, Alioune Ngom
Protein Threading using Parallel Evolution Strategy. IEEE Congress on Evolutionary Computation (2006)
Alioune Ngom
Parallel evolution strategy on grids for the protein threading problem. J. Parallel Distributed Comput. 66 (12) (2006)
Geetali Vidyarthi, Alioune Ngom, Ivan Stojmenovic
A hybrid channel assignment approach using an efficient evolutionary strategy in wireless mobile networks. IEEE Trans. Veh. Technol. 54 (5) (2005)
Leon French, Alioune Ngom, Luis Rueda
Fast Protein Superfamily Classification Using Principal Component Null Space Analysis. Canadian Conference on AI (2005)
Rafiqul Islam, Alioune Ngom
Parallel evolution strategy for protein threading. SCCC (2005)
Wei Yang, Luis Rueda, Alioune Ngom
A simulated annealing approach to find the optimal parameters for fuzzy clustering microarray data. SCCC (2005)
Mona Aggarwal, Robert D. Kent, Alioune Ngom
Genetic Algorithm Based Scheduler for Computational Grids. HPCS (2005)
Luis Rueda, Alioune Ngom
An Empirical Evaluation of the Classification Error of Two Thresholding Methods for Fisher's Classifier. IC-AI (2004)
Alioune Ngom, Dan A. Simovici, Ivan Stojmenovic
Evolutionary Strategy for Learning Multiple-Valued Logic Functions. ISMVL (2004)
Alioune Ngom, Ivan Stojmenovic, Jovisa D. Zunic
On the number of multilinear partitions and the computing capacity of multiple-valued multiple-threshold perceptrons. IEEE Trans. Neural Networks 14 (3) (2003)
Alioune Ngom, Ivan Stojmenovic, Ratko Tosic
The Computing Capacity of Three-Input Multiple-Valued One-Threshold Perceptrons. Neural Process. Lett. 14 (2) (2001)

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Publication Activity (10 Years)

Top Topics

Top Venues

Alioune Ngom