Ali Cakmak

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 11

Top Topics

Selectivity Estimation

Sequence Patterns

Supervised Learning

Top Venues

Turkish J. Electr. Eng. Comput. Sci.

IEEE ACM Trans. Comput. Biol. Bioinform.

Adv. Complex Syst.

Publications

Ali Cakmak, Huzeyfe Ayaz, Soykan Arikan, Ali Reza Ibrahimzada, Seyda Demirkol, Dilara Sönmez, Mehmet T. Hakan, Saime T. Sürmen, Cem Horozoglu, Mehmet B. Dogan, Özlem Küçükhüseyin, Canan Cacina, Bayram Kiran, Ümit Zeybek, Mehmet Baysan, Ilhan Yaylim
Predicting the predisposition to colorectal cancer based on SNP profiles of immune phenotypes using supervised learning models. Medical Biol. Eng. Comput. 61 (1) (2023)
Taha Tekdogan, Ali Cakmak
Benchmarking Apache Spark and Hadoop MapReduce on Big Data Classification. CoRR (2022)
Mehmet Aytimur, Ali Cakmak
Using positional sequence patterns to estimate the selectivity of SQL LIKE queries. Expert Syst. Appl. 165 (2021)
Ali Cakmak, M. Hasan Celik
Personalized Metabolic Analysis of Diseases. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (3) (2021)
Taha Tekdogan, Ali Cakmak
Benchmarking Apache Spark and Hadoop MapReduce on Big Data Classification. ICCBDC (2021)
Gihad N. Sohsah, Ali Reza Ibrahimzada, Huzeyfe Ayaz, Ali Cakmak
Scalable classification of organisms into a taxonomy using hierarchical supervised learners. J. Bioinform. Comput. Biol. 18 (5) (2020)
Mehmet Aytimur, Ali Cakmak
Using Positional Sequence Patterns to Estimate the Selectivity of SQL LIKE Queries. CoRR (2020)
Esma Nafiye Polat, Ali Cakmak, Rabia Nuray-Turan
Exploring the power of supervised learning methods for company name disambiguation in microblog posts. Turkish J. Electr. Eng. Comput. Sci. 28 (5) (2020)
Emrullah Delibas, Ali Uzun, Mehmet Fatih Inan, Onur Guzey, Ali Cakmak
Interactive exploratory soccer data analytics. INFOR Inf. Syst. Oper. Res. 57 (2) (2019)
Mehmet Aytimur, Ali Cakmak
Estimating the selectivity of LIKE queries using pattern-based histograms. Turkish J. Electr. Eng. Comput. Sci. 26 (6) (2018)
Ali Cakmak, Ali Uzun, Emrullah Delibas
Computational Modeling of Pass Effectiveness in Soccer. Adv. Complex Syst. 21 (3-4) (2018)
Abdullah Ercument Cicek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Zehra Meral Özsoyoglu, Gultekin Özsoyoglu
An online system for metabolic network analysis. Database J. Biol. Databases Curation 2014 (2014)
Feruz Davletov, Ali Selman Aydin, Ali Cakmak
High Impact Academic Paper Prediction Using Temporal and Topological Features. CIKM (2014)
A. Ercüment Çiçek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Gultekin Özsoyoglu
PathCase-MAW: An Online Metabolic Network Analysis Workbench. BCB (2013)
Sarp A. Coskun, Xinjian Qi, Ali Cakmak, En Cheng, A. Ercüment Çiçek, Lei Yang, Rishiraj Jadeja, Ranjan K. Dash, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
PathCase-SB: integrating data sources and providing tools for systems biology research. BMC Syst. Biol. 6 (2012)
Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu
A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis. J. Bioinform. Comput. Biol. 10 (1) (2012)
Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Gultekin Özsoyoglu
Computational interpretation of metabolomics measurements: steady-state metabolic network dynamics analysis. BCB (2011)
Ali Cakmak, Xinjian Qi, Sarp A. Coskun, Mitali Das, En Cheng, A. Ercüment Çiçek, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
PathCase-SB architecture and database design. BMC Syst. Biol. 5 (2011)
En Cheng, Ali Cakmak, Z. Meral Özsoyoglu
Efficient query evaluation for DAG-shaped hierarchies. BCB (2010)
Ali Cakmak, Gultekin Özsoyoglu, Richard W. Hanson
Querying metabolism under Different Physiological Constraints. J. Bioinform. Comput. Biol. 8 (2) (2010)
Brendan Elliott, Stephen Mayes, Ali Cakmak, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
Advanced querying interface for biochemical network databases. SAC (2010)
Ali Cakmak, Arun Dsouza, Richard W. Hanson, Z. Meral Özsoyoglu
Analyzing metabolite measurements for automated prediction of underlying biological mechanisms. BCB (2010)
Ali Cakmak, Mustafa Kirac, Gultekin Özsoyoglu
PopulusLog: People information database. ISCIS (2009)
Nattakarn Ratprasartporn, Jonathan Po, Ali Cakmak, Sulieman Bani-Ahmad, Gultekin Özsoyoglu
Context-based literature digital collection search. VLDB J. 18 (1) (2009)
Ali Cakmak, Arun Dsouza, Richard W. Hanson, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
A web-based data source for metabolomics. ISCIS (2009)
Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
, 'PathCase pathways database system', Bioinformatics 2008, 24(21) 2526-2533. Bioinform. 25 (20) (2009)
Ali Cakmak, Gultekin Özsoyoglu
Taxonomy-superimposed graph mining. EDBT (2008)
Ali Cakmak, Gultekin Özsoyoglu
Discovering gene annotations in biomedical text databases. BMC Bioinform. 9 (2008)
Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu
PathCase: pathways database system. Bioinform. 24 (21) (2008)
Ali Cakmak, Gultekin Özsoyoglu
Mining biological networks for unknown pathways. Bioinform. 23 (20) (2007)
Ali Cakmak, Mustafa Kirac, Marc R. Reynolds, Z. Meral Özsoyoglu, Gultekin Özsoyoglu
Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways. SSDBM (2007)
Ali Cakmak, Gultekin Özsoyoglu
Annotating Genes Using Textual Patterns. Pacific Symposium on Biocomputing (2007)
Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali Cakmak, Jonathan Po, Gultekin Özsoyoglu
Evaluating Different Ranking Functions for Context-Based Literature Search. ICDE Workshops (2007)
Nattakarn Ratprasartporn, Ali Cakmak, Gultekin Özsoyoglu
On Data and Visualization Models for Signaling Pathways. SSDBM (2006)
Mustafa Kirac, Ali Cakmak, Gultekin Özsoyoglu
Task-Oriented Integrated Use of Biological Web Data Sources. SSDBM (2006)
Sulieman Bani-Ahmad, Ali Cakmak, Gultekin Özsoyoglu, Abdullah Al-Hamdani
Evaluating Publication Similarity Measures. IEEE Data Eng. Bull. 28 (4) (2005)
Sulieman Bani-Ahmad, Ali Cakmak, Abdullah Al-Hamdani, Gultekin Özsoyoglu
Evaluating Score and Publication Similarity Functions in Digital Libraries. ICADL (2005)